Variant report

Variant	rs1945825
Chromosome Location	chr11:83844790-83844791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1014066	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10501555	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10736760	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10751104	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10751105	0.95[CHB][hapmap]
rs10751106	0.90[CHB][hapmap]
rs10751109	0.82[CHB][hapmap]
rs10792713	0.85[CHB][hapmap]
rs10792717	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs10792718	0.85[CHB][hapmap]
rs10792719	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792720	0.92[ASN][1000 genomes]
rs10792721	0.92[ASN][1000 genomes]
rs10792722	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792723	0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs10792724	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792725	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs10792726	0.86[ASN][1000 genomes]
rs10792727	0.82[CEU][hapmap];0.95[CHB][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792728	0.83[CEU][hapmap];0.95[CHB][hapmap];0.82[EUR][1000 genomes]
rs10792729	0.82[EUR][1000 genomes]
rs10792731	0.90[CHB][hapmap]
rs10898199	0.85[CHB][hapmap]
rs10898202	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs10898204	0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10898205	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10898206	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10898207	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11233930	0.81[ASN][1000 genomes]
rs12363188	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1349820	0.90[CHB][hapmap]
rs1377745	0.94[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1377746	0.95[CHB][hapmap]
rs1377747	0.95[CHB][hapmap]
rs1377748	0.90[CHB][hapmap]
rs1454016	0.83[CEU][hapmap];0.91[CHB][hapmap];0.83[EUR][1000 genomes]
rs1454017	0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs1454018	0.90[ASN][1000 genomes]
rs1454019	0.95[CHB][hapmap];0.89[ASN][1000 genomes]
rs1454026	0.90[CHB][hapmap]
rs1454027	0.90[CHB][hapmap]
rs1551334	0.95[CHB][hapmap]
rs1573572	0.88[CEU][hapmap];0.95[CHB][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1573573	0.97[ASN][1000 genomes]
rs1573574	0.85[CHB][hapmap]
rs1620817	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs1670679	0.93[ASN][1000 genomes]
rs1793037	0.95[CHB][hapmap]
rs1793038	0.95[CHB][hapmap]
rs1793039	0.95[CHB][hapmap]
rs1823844	0.82[ASN][1000 genomes]
rs1869472	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs1894169	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1894170	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1894172	0.85[CHB][hapmap]
rs1945799	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1945800	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1945801	0.89[JPT][hapmap]
rs1945807	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1945808	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1945819	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1945820	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945821	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1945822	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1945823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1945824	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1945826	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1945827	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1945828	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1945832	0.85[CHB][hapmap]
rs2000961	0.95[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs2032401	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs2051472	0.85[CHB][hapmap]
rs2105806	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156848	0.90[CHB][hapmap]
rs2298830	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs4547116	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs4943886	0.85[CHB][hapmap]
rs4944461	0.85[CHB][hapmap]
rs4944463	0.85[CHB][hapmap]
rs4944468	0.90[CHB][hapmap]
rs4944471	0.90[CHB][hapmap]
rs4944472	0.90[CHB][hapmap]
rs6592163	0.85[CHB][hapmap]
rs6592164	0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592165	0.90[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592166	0.82[ASN][1000 genomes]
rs7104249	0.89[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7108582	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7109671	0.85[CHB][hapmap]
rs7114261	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7123516	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7123584	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs756196	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs756197	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925643	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7927039	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7929117	0.82[ASN][1000 genomes]
rs7935399	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs7941004	0.90[CHB][hapmap]
rs7943267	0.95[CHB][hapmap]
rs7948263	0.95[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs872510	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872511	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872512	0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs884873	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs970226	0.81[CHB][hapmap]
rs9787893	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs988322	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2760422	chr11:83828680-83845579	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83840400-83845000	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:83840800-83847800	Weak transcription	Brain Anterior Caudate	brain
3	chr11:83841400-83845200	Weak transcription	Fetal Heart	heart
4	chr11:83842400-83847600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:83842400-83847800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83842600-83847600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83842800-83848000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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