Variant report

Variant	rs1945820
Chromosome Location	chr11:83848005-83848006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1014066	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10501555	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10736760	0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs10751104	0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10751105	0.90[CHB][hapmap];0.83[CHD][hapmap];0.83[MEX][hapmap]
rs10751106	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs10792713	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs10792716	0.81[CHB][hapmap]
rs10792717	0.81[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.94[MEX][hapmap]
rs10792718	0.81[CHB][hapmap]
rs10792719	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792720	0.92[ASN][1000 genomes]
rs10792721	0.92[ASN][1000 genomes]
rs10792722	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.92[ASN][1000 genomes]
rs10792723	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10792724	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792725	0.95[CHB][hapmap];0.97[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs10792726	0.86[ASN][1000 genomes]
rs10792727	0.90[CHB][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792728	0.90[CHB][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792729	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792731	0.85[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap];0.87[MEX][hapmap]
rs10898199	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs10898202	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs10898204	0.95[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10898205	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.96[ASN][1000 genomes]
rs10898206	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10898207	0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.96[ASN][1000 genomes]
rs11233900	0.81[CHB][hapmap]
rs11233930	0.81[ASN][1000 genomes]
rs12363188	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1349820	0.85[CHB][hapmap];0.80[CHD][hapmap];0.91[GIH][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap]
rs1377745	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1377746	0.90[CHB][hapmap]
rs1377747	0.90[CHB][hapmap]
rs1377748	0.85[CHB][hapmap];0.80[CHD][hapmap];0.88[GIH][hapmap]
rs1454016	0.95[CHB][hapmap];0.85[YRI][hapmap];0.83[EUR][1000 genomes]
rs1454017	0.90[CHB][hapmap];0.82[EUR][1000 genomes]
rs1454018	0.90[ASN][1000 genomes]
rs1454019	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1454026	0.85[CHB][hapmap]
rs1454027	0.95[CHB][hapmap];0.87[CHD][hapmap]
rs1551334	0.90[CHB][hapmap];0.91[CHD][hapmap]
rs1573570	0.80[CHB][hapmap]
rs1573572	0.90[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1573573	0.97[ASN][1000 genomes]
rs1573574	0.81[CHB][hapmap];0.90[CHD][hapmap];0.94[MEX][hapmap]
rs1620817	0.95[CHB][hapmap];0.83[JPT][hapmap];0.93[ASN][1000 genomes]
rs1670679	0.93[ASN][1000 genomes]
rs1793037	0.90[CHB][hapmap]
rs1793038	0.90[CHB][hapmap]
rs1793039	0.90[CHB][hapmap]
rs1823844	0.82[ASN][1000 genomes]
rs1869472	0.90[CHB][hapmap];0.93[CHD][hapmap];0.83[ASN][1000 genomes]
rs1894169	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1894170	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1894171	0.81[CHB][hapmap]
rs1894172	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs1945799	0.86[CHB][hapmap];0.90[CHD][hapmap];0.89[JPT][hapmap]
rs1945800	0.81[CHB][hapmap];0.87[CHD][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs1945801	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1945807	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1945808	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[ASN][1000 genomes]
rs1945819	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1945821	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1945822	0.93[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1945823	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1945824	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1945825	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945826	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1945827	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1945828	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1945832	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1984374	0.81[CHB][hapmap]
rs2000961	1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[JPT][hapmap];0.97[ASN][1000 genomes]
rs2032401	0.81[CHB][hapmap];0.90[CHD][hapmap];1.00[MEX][hapmap]
rs2051472	0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[MEX][hapmap]
rs2105806	0.93[ASW][hapmap];0.94[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156848	0.85[CHB][hapmap]
rs2298830	0.86[CHB][hapmap];0.93[CHD][hapmap];0.83[JPT][hapmap];0.88[MEX][hapmap]
rs3905309	0.81[CHB][hapmap]
rs4547116	0.87[ASW][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.91[LWK][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap];0.85[YRI][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4943886	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs4944461	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs4944463	0.81[CHB][hapmap];0.90[CHD][hapmap];0.88[MEX][hapmap]
rs4944464	0.81[CHB][hapmap]
rs4944468	0.95[CHB][hapmap];0.90[CHD][hapmap];0.85[GIH][hapmap];0.88[MEX][hapmap]
rs4944471	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs4944472	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs6592163	0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[MEX][hapmap]
rs6592164	0.95[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs6592165	0.86[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.91[ASN][1000 genomes]
rs6592166	0.82[ASN][1000 genomes]
rs7104249	0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7108582	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7109671	0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[MEX][hapmap]
rs7114261	0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs7114926	0.81[CHB][hapmap]
rs7123516	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7123584	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs756196	1.00[ASN][1000 genomes]
rs756197	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7924503	0.81[CHB][hapmap]
rs7924835	0.81[CHB][hapmap]
rs7925643	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7927039	0.82[CEU][hapmap];0.90[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7927619	0.81[CHB][hapmap]
rs7929117	0.82[ASN][1000 genomes]
rs7935399	0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7941004	0.85[CHB][hapmap]
rs7943267	0.90[CHB][hapmap]
rs7948263	1.00[CHB][hapmap];0.83[JPT][hapmap];0.95[ASN][1000 genomes]
rs872510	0.94[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872511	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs872512	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs884873	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs970226	0.85[CHB][hapmap]
rs9787893	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs988322	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83846600-83849600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:83847000-83848800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:83847400-83849000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:83847600-83849600	Enhancers	Brain Angular Gyrus	brain
6	chr11:83847600-83850200	Enhancers	Brain Substantia Nigra	brain
7	chr11:83847800-83849200	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr11:83847800-83849600	Enhancers	Brain Cingulate Gyrus	brain
9	chr11:83848000-83848400	Weak transcription	Brain Anterior Caudate	brain
10	chr11:83848000-83849400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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