Variant report

Variant	rs10792726
Chromosome Location	chr11:83873555-83873556
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1014066	0.86[ASN][1000 genomes]
rs10501555	0.86[ASN][1000 genomes]
rs10736760	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10751104	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10792719	0.80[ASN][1000 genomes]
rs10792720	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792721	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792722	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792723	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10792724	0.84[ASN][1000 genomes]
rs10792725	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10792727	0.83[ASN][1000 genomes]
rs10792728	0.83[ASN][1000 genomes]
rs10792729	0.84[ASN][1000 genomes]
rs10898204	0.82[ASN][1000 genomes]
rs10898205	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10898206	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10898207	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11233930	0.85[ASN][1000 genomes]
rs1377745	0.92[ASN][1000 genomes]
rs1377747	0.85[CEU][hapmap]
rs1377748	0.84[CEU][hapmap]
rs1454016	0.81[ASN][1000 genomes]
rs1454017	0.81[ASN][1000 genomes]
rs1454018	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1454019	0.93[ASN][1000 genomes]
rs1454020	0.84[ASN][1000 genomes]
rs1454025	0.85[CEU][hapmap]
rs1454027	0.81[ASN][1000 genomes]
rs1551334	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1573572	0.84[ASN][1000 genomes]
rs1573573	0.83[ASN][1000 genomes]
rs1620817	0.92[ASN][1000 genomes]
rs1670679	0.92[ASN][1000 genomes]
rs1793038	0.84[ASN][1000 genomes]
rs1793039	0.84[ASN][1000 genomes]
rs1823844	0.84[ASN][1000 genomes]
rs1869472	0.85[ASN][1000 genomes]
rs1894169	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1894170	0.80[ASN][1000 genomes]
rs1945808	1.00[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1945819	0.85[ASN][1000 genomes]
rs1945820	0.86[ASN][1000 genomes]
rs1945821	0.86[ASN][1000 genomes]
rs1945822	0.85[ASN][1000 genomes]
rs1945823	0.85[ASN][1000 genomes]
rs1945824	0.85[ASN][1000 genomes]
rs1945825	0.86[ASN][1000 genomes]
rs1945826	0.84[ASN][1000 genomes]
rs1945827	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1945828	0.83[ASN][1000 genomes]
rs2000961	0.89[ASN][1000 genomes]
rs2105806	0.83[ASN][1000 genomes]
rs2213113	0.80[ASN][1000 genomes]
rs4547116	0.81[ASN][1000 genomes]
rs4944468	0.81[ASN][1000 genomes]
rs6592165	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6592166	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7104249	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7108582	0.82[ASN][1000 genomes]
rs7114261	0.81[ASN][1000 genomes]
rs7123516	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7123584	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs756196	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs756197	0.86[ASN][1000 genomes]
rs7925643	0.92[CEU][hapmap];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7927039	0.83[ASN][1000 genomes]
rs7929117	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7948263	0.93[CEU][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs872510	0.86[ASN][1000 genomes]
rs872511	0.86[ASN][1000 genomes]
rs872512	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs884873	0.84[ASN][1000 genomes]
rs9787893	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83867800-83873800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83868800-83874000	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83868800-83884200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83869000-83875800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:83872400-83873600	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:83872600-83875400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:83872800-83874400	Weak transcription	Brain Substantia Nigra	brain

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