Variant report

Variant	rs10792724
Chromosome Location	chr11:83847283-83847284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1014066	0.98[ASN][1000 genomes]
rs10501555	0.98[ASN][1000 genomes]
rs10736760	0.91[ASN][1000 genomes]
rs10751104	0.95[ASN][1000 genomes]
rs10792719	0.91[ASN][1000 genomes]
rs10792720	0.91[ASN][1000 genomes]
rs10792721	0.91[ASN][1000 genomes]
rs10792722	0.91[ASN][1000 genomes]
rs10792723	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10792725	0.91[ASN][1000 genomes]
rs10792726	0.84[ASN][1000 genomes]
rs10792727	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10792728	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792729	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10898204	0.94[ASN][1000 genomes]
rs10898205	0.94[ASN][1000 genomes]
rs10898206	0.94[ASN][1000 genomes]
rs10898207	0.94[ASN][1000 genomes]
rs1377745	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1454016	0.83[EUR][1000 genomes]
rs1454017	0.82[EUR][1000 genomes]
rs1454018	0.88[ASN][1000 genomes]
rs1454019	0.87[ASN][1000 genomes]
rs1573572	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1573573	0.95[ASN][1000 genomes]
rs1620817	0.91[ASN][1000 genomes]
rs1670679	0.91[ASN][1000 genomes]
rs1823844	0.80[ASN][1000 genomes]
rs1869472	0.81[ASN][1000 genomes]
rs1894169	0.94[ASN][1000 genomes]
rs1894170	0.89[ASN][1000 genomes]
rs1945808	0.91[ASN][1000 genomes]
rs1945819	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1945820	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1945821	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1945822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1945823	0.97[ASN][1000 genomes]
rs1945824	0.97[ASN][1000 genomes]
rs1945825	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1945826	0.97[ASN][1000 genomes]
rs1945827	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1945828	0.96[ASN][1000 genomes]
rs2000961	0.95[ASN][1000 genomes]
rs2105806	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4547116	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6592164	0.89[ASN][1000 genomes]
rs6592165	0.89[ASN][1000 genomes]
rs6592166	0.81[ASN][1000 genomes]
rs7104249	0.89[ASN][1000 genomes]
rs7108582	0.94[ASN][1000 genomes]
rs7114261	0.93[ASN][1000 genomes]
rs7123516	0.91[ASN][1000 genomes]
rs7123584	0.91[ASN][1000 genomes]
rs756196	0.98[ASN][1000 genomes]
rs756197	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7925643	0.91[ASN][1000 genomes]
rs7927039	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7929117	0.81[ASN][1000 genomes]
rs7948263	0.93[ASN][1000 genomes]
rs872510	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872511	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872512	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs884873	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9787893	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83840800-83847800	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83842400-83847600	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83842400-83847800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83842600-83847600	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83842800-83848000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:83846600-83849600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:83846600-83858200	Enhancers	Brain Hippocampus Middle	brain
8	chr11:83847000-83848800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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