Variant report

Variant	rs7929117
Chromosome Location	chr11:83820014-83820015
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83814523..83816503-chr11:83818497..83820739,3	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1014066	0.82[ASN][1000 genomes]
rs10501555	0.82[ASN][1000 genomes]
rs10736760	0.88[EUR][1000 genomes]
rs10751104	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10792719	0.90[ASN][1000 genomes]
rs10792720	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10792721	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10792722	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10792723	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10792724	0.81[ASN][1000 genomes]
rs10792725	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10792726	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10898202	0.85[ASN][1000 genomes]
rs10898204	0.85[ASN][1000 genomes]
rs10898205	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898206	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10898207	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12363188	0.83[ASN][1000 genomes]
rs1454018	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1551334	0.80[EUR][1000 genomes]
rs1573573	0.84[ASN][1000 genomes]
rs1894169	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1894170	0.88[ASN][1000 genomes]
rs1945799	0.85[ASN][1000 genomes]
rs1945800	0.80[ASN][1000 genomes]
rs1945807	0.94[ASN][1000 genomes]
rs1945808	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1945819	0.82[ASN][1000 genomes]
rs1945820	0.82[ASN][1000 genomes]
rs1945821	0.82[ASN][1000 genomes]
rs1945822	0.83[ASN][1000 genomes]
rs1945823	0.81[ASN][1000 genomes]
rs1945824	0.81[ASN][1000 genomes]
rs1945825	0.82[ASN][1000 genomes]
rs1945826	0.81[ASN][1000 genomes]
rs1945827	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1945828	0.81[ASN][1000 genomes]
rs2000961	0.81[ASN][1000 genomes]
rs2105806	0.81[ASN][1000 genomes]
rs2298830	0.96[ASN][1000 genomes]
rs3750917	0.85[ASN][1000 genomes]
rs6592164	0.92[ASN][1000 genomes]
rs6592165	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7104249	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7108582	0.83[ASN][1000 genomes]
rs7114261	0.84[ASN][1000 genomes]
rs7123516	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7123584	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs756196	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs756197	0.82[ASN][1000 genomes]
rs7925643	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7927039	0.81[ASN][1000 genomes]
rs7935399	0.85[ASN][1000 genomes]
rs7948263	0.85[AMR][1000 genomes]
rs872510	0.82[ASN][1000 genomes]
rs872511	0.82[ASN][1000 genomes]
rs872512	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs884873	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83816600-83829200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83819000-83820400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83819800-83820200	Enhancers	Brain Cingulate Gyrus	brain

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