Variant report

Variant	rs1894170
Chromosome Location	chr11:83818605-83818606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83814523..83816503-chr11:83818497..83820739,3	MCF-7	breast:

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs1014066	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10501555	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10736760	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10751104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10751105	0.90[CHB][hapmap]
rs10751106	0.85[CHB][hapmap]
rs10792712	0.81[CHB][hapmap]
rs10792713	0.90[CHB][hapmap]
rs10792716	0.82[CHB][hapmap]
rs10792717	0.90[CHB][hapmap]
rs10792718	0.90[CHB][hapmap]
rs10792719	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10792720	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10792721	0.98[ASN][1000 genomes]
rs10792722	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10792723	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792724	0.89[ASN][1000 genomes]
rs10792725	0.95[CHB][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs10792726	0.80[ASN][1000 genomes]
rs10792727	0.91[CHB][hapmap]
rs10792728	0.91[CHB][hapmap]
rs10792731	0.85[CHB][hapmap]
rs10898199	0.90[CHB][hapmap]
rs10898202	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs10898204	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898205	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10898206	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10898207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11233900	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs12363188	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes]
rs1349820	0.85[CHB][hapmap]
rs1377745	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs1377746	0.90[CHB][hapmap]
rs1377747	0.91[CHB][hapmap]
rs1377748	0.85[CHB][hapmap]
rs1384751	0.81[CHB][hapmap]
rs1454016	0.87[CHB][hapmap]
rs1454017	0.82[CHB][hapmap]
rs1454018	0.84[ASN][1000 genomes]
rs1454019	0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1454026	0.86[CHB][hapmap]
rs1454027	0.86[CHB][hapmap]
rs1551334	0.90[CHB][hapmap]
rs1573570	0.81[CHB][hapmap]
rs1573572	0.90[CHB][hapmap]
rs1573573	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1573574	0.90[CHB][hapmap]
rs1620817	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1670679	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1793037	0.91[CHB][hapmap]
rs1793038	0.91[CHB][hapmap];0.82[YRI][hapmap]
rs1793039	0.91[CHB][hapmap]
rs1869472	0.90[CHB][hapmap]
rs1894169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1894171	0.82[CHB][hapmap]
rs1894172	0.90[CHB][hapmap]
rs1945799	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.83[AMR][1000 genomes]
rs1945800	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1945801	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1945805	0.81[CHB][hapmap]
rs1945807	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1945808	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1945814	0.81[CHB][hapmap]
rs1945819	0.90[ASN][1000 genomes]
rs1945820	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1945821	0.91[ASN][1000 genomes]
rs1945822	0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1945823	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1945824	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1945825	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1945826	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1945827	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1945828	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1945832	0.90[CHB][hapmap]
rs1984374	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs2000961	0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2032401	0.90[CHB][hapmap]
rs2051472	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs2105806	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2156848	0.86[CHB][hapmap]
rs2298830	0.95[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2625510	0.81[CHB][hapmap]
rs3750917	1.00[CEU][hapmap]
rs3905309	0.82[CHB][hapmap]
rs4547116	0.86[CHB][hapmap]
rs4586191	0.81[CHB][hapmap]
rs4943885	0.81[CHB][hapmap]
rs4943886	0.90[CHB][hapmap]
rs4944460	0.81[CHB][hapmap]
rs4944461	0.90[CHB][hapmap]
rs4944463	0.90[CHB][hapmap]
rs4944464	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs4944468	0.86[CHB][hapmap]
rs4944471	0.85[CHB][hapmap]
rs4944472	0.85[CHB][hapmap]
rs6592163	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs6592164	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6592165	0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7104249	0.95[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7108582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7109671	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs7114261	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7114926	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7123516	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7123584	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs756196	0.91[ASN][1000 genomes]
rs756197	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7924503	0.82[CHB][hapmap]
rs7924835	0.81[CHB][hapmap]
rs7925643	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7927039	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7927619	0.82[CHB][hapmap]
rs7928752	0.81[CHB][hapmap]
rs7929117	0.88[ASN][1000 genomes]
rs7929774	1.00[CEU][hapmap]
rs7935399	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs7941004	0.86[CHB][hapmap]
rs7943267	0.91[CHB][hapmap]
rs7948263	0.91[CHB][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs872510	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs872511	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs872512	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs884873	0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs963146	0.80[CHB][hapmap]
rs9787893	0.83[ASN][1000 genomes]
rs988322	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83814800-83819800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83816400-83820000	Enhancers	Brain Substantia Nigra	brain
3	chr11:83816600-83829200	Weak transcription	Brain Angular Gyrus	brain
4	chr11:83817000-83819000	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83817400-83818800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:83818200-83818800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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