Variant report

Variant	rs1945807
Chromosome Location	chr11:83815889-83815890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83814523..83816503-chr11:83818497..83820739,3	MCF-7	breast:

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs1014066	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10501555	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10736760	0.90[CHB][hapmap]
rs10751104	0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs10751105	0.85[CHB][hapmap]
rs10792712	0.84[CHB][hapmap]
rs10792713	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10792714	0.81[EUR][1000 genomes]
rs10792715	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10792716	0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10792717	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs10792718	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs10792719	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10792720	0.87[ASN][1000 genomes]
rs10792721	0.87[ASN][1000 genomes]
rs10792722	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs10792723	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs10792725	0.90[CHB][hapmap]
rs10898199	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs10898202	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10898204	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10898205	0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898206	0.85[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs10898207	0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs11233900	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11602701	0.93[JPT][hapmap]
rs12363188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12574301	0.94[CHB][hapmap];0.92[JPT][hapmap]
rs12577433	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1377746	0.85[CHB][hapmap]
rs1384751	0.84[CHB][hapmap]
rs1454027	0.81[CHB][hapmap]
rs1483384	0.85[CHB][hapmap]
rs1540188	0.85[CHB][hapmap]
rs1551334	0.85[CHB][hapmap]
rs1573570	0.94[CHB][hapmap];0.86[JPT][hapmap]
rs1573572	0.85[CHB][hapmap]
rs1573573	0.81[ASN][1000 genomes]
rs1573574	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs1620817	1.00[CEU][hapmap];0.81[CHB][hapmap]
rs1670679	1.00[CEU][hapmap]
rs1869472	0.85[CHB][hapmap]
rs1894169	0.85[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs1894170	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1894171	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs1894172	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs1945799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1945800	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1945801	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1945805	0.84[CHB][hapmap]
rs1945808	0.90[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs1945814	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs1945816	0.85[CHB][hapmap]
rs1945820	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1945822	0.85[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs1945823	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes]
rs1945824	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1945825	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1945826	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap]
rs1945827	0.86[JPT][hapmap]
rs1945828	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs1945830	0.81[ASN][1000 genomes]
rs1945832	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[EUR][1000 genomes]
rs1984374	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2000961	0.85[CHB][hapmap]
rs2032401	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs2051472	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2105806	0.90[CHB][hapmap];0.88[JPT][hapmap]
rs2298830	1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2625510	0.84[CHB][hapmap]
rs2853022	0.80[CHB][hapmap]
rs3750917	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3905309	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4547116	0.81[CHB][hapmap]
rs4586191	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4943885	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4943886	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4944460	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4944461	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4944463	0.94[CHB][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs4944464	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944468	0.81[CHB][hapmap]
rs6592163	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6592164	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6592165	0.90[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs7103649	0.85[CHB][hapmap]
rs7104249	0.80[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7108582	0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs7109671	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes]
rs7114261	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7114926	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7123516	0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs7123584	0.81[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs756197	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs7924476	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs7924503	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs7924835	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7925643	0.81[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs7927039	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs7927619	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7928752	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7929117	0.94[ASN][1000 genomes]
rs7929774	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7935399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7952399	0.88[CHB][hapmap];0.92[JPT][hapmap]
rs872510	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs872511	0.88[JPT][hapmap]
rs872512	0.88[JPT][hapmap]
rs884873	0.86[JPT][hapmap]
rs963146	0.83[CHB][hapmap]
rs970226	0.90[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898028	chr11:83717887-83817360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2751034	chr11:83801970-83840272	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83814600-83816400	Weak transcription	Brain Substantia Nigra	brain
2	chr11:83814600-83817400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:83814600-83817400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:83814600-83817400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:83814800-83816200	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83814800-83816400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:83814800-83816400	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83814800-83817400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:83814800-83817600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:83814800-83817800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83814800-83819800	Weak transcription	Brain Cingulate Gyrus	brain

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