Variant report

Variant	rs9787893
Chromosome Location	chr11:83875779-83875780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1014066	0.89[ASN][1000 genomes]
rs10501555	0.89[ASN][1000 genomes]
rs10736760	0.96[ASN][1000 genomes]
rs10751104	0.86[ASN][1000 genomes]
rs10792719	0.83[ASN][1000 genomes]
rs10792720	0.83[ASN][1000 genomes]
rs10792721	0.83[ASN][1000 genomes]
rs10792722	0.83[ASN][1000 genomes]
rs10792723	0.83[ASN][1000 genomes]
rs10792724	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792725	0.96[ASN][1000 genomes]
rs10792726	0.93[ASN][1000 genomes]
rs10792727	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10792728	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10792729	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10898204	0.85[ASN][1000 genomes]
rs10898205	0.85[ASN][1000 genomes]
rs10898206	0.85[ASN][1000 genomes]
rs10898207	0.85[ASN][1000 genomes]
rs11233930	0.92[ASN][1000 genomes]
rs1349820	0.82[ASN][1000 genomes]
rs1377745	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1377748	0.81[ASN][1000 genomes]
rs1454016	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1454017	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1454018	0.92[ASN][1000 genomes]
rs1454019	0.93[ASN][1000 genomes]
rs1454020	0.84[ASN][1000 genomes]
rs1454027	0.81[ASN][1000 genomes]
rs1551334	0.87[ASN][1000 genomes]
rs1573572	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1573573	0.86[ASN][1000 genomes]
rs1620817	0.96[ASN][1000 genomes]
rs1670679	0.96[ASN][1000 genomes]
rs1793038	0.84[ASN][1000 genomes]
rs1793039	0.84[ASN][1000 genomes]
rs1823844	0.91[ASN][1000 genomes]
rs1869472	0.90[ASN][1000 genomes]
rs1894169	0.85[ASN][1000 genomes]
rs1894170	0.83[ASN][1000 genomes]
rs1945808	0.83[ASN][1000 genomes]
rs1945819	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1945820	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1945821	0.89[ASN][1000 genomes]
rs1945822	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1945823	0.88[ASN][1000 genomes]
rs1945824	0.88[ASN][1000 genomes]
rs1945825	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1945826	0.87[ASN][1000 genomes]
rs1945827	0.86[ASN][1000 genomes]
rs1945828	0.86[ASN][1000 genomes]
rs2000961	0.92[ASN][1000 genomes]
rs2105806	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2123818	0.82[ASN][1000 genomes]
rs2168007	0.82[ASN][1000 genomes]
rs2213112	0.82[ASN][1000 genomes]
rs2213113	0.83[ASN][1000 genomes]
rs4547116	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944468	0.81[ASN][1000 genomes]
rs6592164	0.82[ASN][1000 genomes]
rs6592165	0.82[ASN][1000 genomes]
rs6592166	0.85[ASN][1000 genomes]
rs7104249	0.82[ASN][1000 genomes]
rs7108582	0.85[ASN][1000 genomes]
rs7114261	0.84[ASN][1000 genomes]
rs7123516	0.83[ASN][1000 genomes]
rs7123584	0.83[ASN][1000 genomes]
rs756196	0.89[ASN][1000 genomes]
rs756197	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7925643	0.83[ASN][1000 genomes]
rs7927039	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7948263	0.94[ASN][1000 genomes]
rs872510	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs872511	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs872512	0.89[ASN][1000 genomes]
rs884873	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83868800-83884200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:83869000-83875800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:83873800-83876400	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:83874400-83875800	Enhancers	Brain Substantia Nigra	brain
5	chr11:83874400-83876000	Weak transcription	Brain Germinal Matrix	brain
6	chr11:83874800-83875800	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:83875400-83876200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:83875600-83875800	Weak transcription	Brain Angular Gyrus	brain
9	chr11:83875600-83876000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:83875600-83876400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:83875600-83876600	Enhancers	Cortex derived primary cultured neurospheres	brain

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