Variant report

Variant	rs1454025
Chromosome Location	chr11:83909429-83909430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10732891	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736760	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs10736762	0.94[ASN][1000 genomes]
rs10736763	0.94[ASN][1000 genomes]
rs10751104	0.84[CEU][hapmap]
rs10751105	0.91[CEU][hapmap]
rs10751107	0.92[ASN][1000 genomes]
rs10792722	0.84[CEU][hapmap]
rs10792723	0.83[CEU][hapmap]
rs10792725	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs10792726	0.85[CEU][hapmap]
rs10792727	0.91[ASN][1000 genomes]
rs10792728	0.88[ASN][1000 genomes]
rs10792729	0.88[ASN][1000 genomes]
rs10792731	0.91[CEU][hapmap]
rs10898205	0.84[CEU][hapmap]
rs10898206	0.85[CEU][hapmap]
rs10898207	0.84[CEU][hapmap]
rs10898214	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11233930	0.90[ASN][1000 genomes]
rs12272414	0.94[ASN][1000 genomes]
rs1349820	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1377746	0.92[ASN][1000 genomes]
rs1377747	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1377748	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1454016	0.88[ASN][1000 genomes]
rs1454017	0.88[ASN][1000 genomes]
rs1454020	0.87[ASN][1000 genomes]
rs1454022	0.89[ASN][1000 genomes]
rs1454027	0.88[ASN][1000 genomes]
rs1551334	0.82[CEU][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1551335	0.94[ASN][1000 genomes]
rs1573572	0.89[ASN][1000 genomes]
rs1620817	0.81[ASN][1000 genomes]
rs1670679	0.81[ASN][1000 genomes]
rs1793037	0.93[ASN][1000 genomes]
rs1793038	0.88[ASN][1000 genomes]
rs1793039	0.88[ASN][1000 genomes]
rs1813461	0.94[ASN][1000 genomes]
rs1823844	0.89[ASN][1000 genomes]
rs1869472	0.90[ASN][1000 genomes]
rs1894169	0.85[CEU][hapmap]
rs1945808	0.84[CEU][hapmap]
rs1945827	0.84[CEU][hapmap]
rs2123818	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2156848	0.94[ASN][1000 genomes]
rs2168007	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2213112	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2213113	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4454750	0.93[ASN][1000 genomes]
rs4547116	0.88[ASN][1000 genomes]
rs4943888	0.94[ASN][1000 genomes]
rs4944468	0.88[ASN][1000 genomes]
rs4944471	0.94[ASN][1000 genomes]
rs4944472	0.94[ASN][1000 genomes]
rs4944473	0.94[ASN][1000 genomes]
rs6592165	0.84[CEU][hapmap]
rs7104249	0.83[CEU][hapmap]
rs7112322	0.92[CEU][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7123516	0.85[CEU][hapmap]
rs7123584	0.85[CEU][hapmap]
rs7925643	0.84[CEU][hapmap]
rs7937260	0.88[ASN][1000 genomes]
rs7943267	0.93[ASN][1000 genomes]
rs7948263	0.81[ASN][1000 genomes]
rs7951073	0.85[ASN][1000 genomes]
rs872512	0.85[CEU][hapmap]
rs970226	0.86[ASN][1000 genomes]
rs9787893	0.82[ASN][1000 genomes]
rs988322	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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