Variant report

Variant	rs7112322
Chromosome Location	chr11:83923680-83923681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10128587	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1022308	0.85[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs1040131	0.85[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.82[ASN][1000 genomes]
rs10732891	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10751105	0.83[CEU][hapmap];0.94[JPT][hapmap]
rs10751106	0.94[JPT][hapmap];0.80[YRI][hapmap]
rs10751109	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10751110	0.88[ASN][1000 genomes]
rs10751112	0.83[ASN][1000 genomes]
rs10792727	0.88[JPT][hapmap]
rs10792731	0.83[CEU][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs10792740	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10792742	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs10792744	1.00[JPT][hapmap]
rs10792745	0.89[JPT][hapmap]
rs10792746	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10898214	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10898215	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10898216	0.82[ASN][1000 genomes]
rs10898217	0.83[ASN][1000 genomes]
rs10898218	0.83[ASN][1000 genomes]
rs10898219	0.81[ASN][1000 genomes]
rs10898222	0.82[CHB][hapmap]
rs11233953	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11233954	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11233956	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11233963	0.94[JPT][hapmap]
rs12278134	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12281587	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1349820	0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs1377746	0.89[JPT][hapmap]
rs1377747	0.92[CEU][hapmap];0.89[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1377748	0.91[CEU][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1399617	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1399618	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1454021	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1454023	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1454025	0.92[CEU][hapmap]
rs1454026	0.94[JPT][hapmap]
rs1515084	0.94[JPT][hapmap]
rs1515091	0.82[ASN][1000 genomes]
rs1515092	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1515094	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1551334	0.81[AMR][1000 genomes]
rs1573572	0.88[JPT][hapmap]
rs1793037	0.89[JPT][hapmap]
rs1793039	0.83[JPT][hapmap]
rs1849877	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1869470	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[ASN][1000 genomes]
rs1869471	0.81[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs1869472	0.88[JPT][hapmap]
rs1901973	0.83[ASN][1000 genomes]
rs2123818	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2156848	0.94[JPT][hapmap]
rs2213112	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2213113	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2374526	0.81[ASN][1000 genomes]
rs4354715	0.85[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.84[ASN][1000 genomes]
rs4943889	0.89[JPT][hapmap]
rs4944471	0.94[JPT][hapmap];0.80[YRI][hapmap]
rs4944472	0.94[JPT][hapmap]
rs4944474	0.83[ASN][1000 genomes]
rs7103429	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7106175	0.86[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7120366	0.84[ASN][1000 genomes]
rs7122248	0.86[CHB][hapmap]
rs7130225	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs73519747	0.82[ASN][1000 genomes]
rs7483548	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7925243	0.85[CHB][hapmap];0.94[JPT][hapmap];0.84[YRI][hapmap];0.83[ASN][1000 genomes]
rs7933566	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7937925	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7941004	0.94[JPT][hapmap];0.86[YRI][hapmap]
rs7943267	0.89[JPT][hapmap]
rs896996	0.82[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs896997	0.82[CHB][hapmap];0.89[JPT][hapmap]
rs930790	0.82[ASN][1000 genomes]
rs963259	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs988322	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83923000-83924000	Active TSS	Brain Angular Gyrus	brain
2	chr11:83923000-83924000	Active TSS	Brain Substantia Nigra	brain
3	chr11:83923000-83924200	Active TSS	Brain Cingulate Gyrus	brain
4	chr11:83923000-83924400	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr11:83923200-83924200	Active TSS	Brain Hippocampus Middle	brain
6	chr11:83923200-83924400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:83923200-83924400	Active TSS	GM12878-XiMat	blood
8	chr11:83923400-83923800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr11:83923400-83924000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:83923400-83924200	Active TSS	HepG2	liver
11	chr11:83923400-83924400	Active TSS	Brain Anterior Caudate	brain
12	chr11:83923400-83924600	Active TSS	Hela-S3	cervix
13	chr11:83923600-83923800	Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr11:83923600-83923800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:83923600-83924000	Active TSS	Placenta	Placenta

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