Variant report

Variant	rs7483548
Chromosome Location	chr11:83971508-83971509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10128587	0.95[CHB][hapmap];0.83[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs1022308	0.95[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs1040131	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs10751105	0.83[JPT][hapmap]
rs10751106	0.83[JPT][hapmap]
rs10751109	0.88[JPT][hapmap]
rs10751112	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10792731	0.83[JPT][hapmap]
rs10792740	0.95[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792742	0.95[CHB][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10792744	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[GIH][hapmap];0.88[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10792745	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10792746	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs10898214	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs10898215	0.95[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.89[ASN][1000 genomes]
rs10898216	0.90[ASN][1000 genomes]
rs10898217	0.89[ASN][1000 genomes]
rs10898218	0.89[ASN][1000 genomes]
rs10898219	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10898222	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11233953	0.95[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.89[ASN][1000 genomes]
rs11233954	0.95[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.87[MEX][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11233956	0.95[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs11233963	0.88[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11233967	0.95[CHB][hapmap];0.83[CHD][hapmap];0.87[MEX][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12278134	0.88[CEU][hapmap];1.00[CHB][hapmap];0.81[CHD][hapmap];0.96[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12281587	0.95[CHB][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1349820	0.83[JPT][hapmap]
rs1377748	0.83[JPT][hapmap]
rs1399617	0.90[CHB][hapmap];0.84[CHD][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs1399618	1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs1454021	0.95[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1454023	0.95[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs1454026	0.83[JPT][hapmap]
rs1515084	0.95[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs1515091	0.90[ASN][1000 genomes]
rs1515092	1.00[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.88[MEX][hapmap];0.91[ASN][1000 genomes]
rs1515094	0.90[CHB][hapmap];0.88[JPT][hapmap];0.94[ASN][1000 genomes]
rs1849877	0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs1869470	0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1869471	0.95[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1901973	0.89[ASN][1000 genomes]
rs2156848	0.83[JPT][hapmap]
rs2374526	0.90[ASN][1000 genomes]
rs4354715	0.95[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap];0.87[ASN][1000 genomes]
rs4943889	0.95[CHB][hapmap];0.88[JPT][hapmap];0.95[ASN][1000 genomes]
rs4944471	0.83[JPT][hapmap]
rs4944472	0.83[JPT][hapmap]
rs4944474	0.89[ASN][1000 genomes]
rs7103429	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7106175	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs7112322	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs7122248	0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs7130225	0.90[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs73519747	0.90[ASN][1000 genomes]
rs7925243	0.95[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs7933566	0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs7937925	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.94[MEX][hapmap];0.81[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7941004	0.83[JPT][hapmap]
rs896996	0.90[CHB][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs896997	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs896998	0.96[ASN][1000 genomes]
rs930790	0.90[ASN][1000 genomes]
rs963259	0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83961800-83974000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:83965000-83971800	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83968200-83971800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83969600-83971800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83970600-83971600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:83970800-83972000	Weak transcription	Brain Substantia Nigra	brain
7	chr11:83971000-83972000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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