Variant report

Variant	rs10792746
Chromosome Location	chr11:83976634-83976635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10128587	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1022308	1.00[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1040131	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs10751109	0.82[JPT][hapmap]
rs10751112	0.88[ASN][1000 genomes]
rs10792740	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs10792742	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10792744	0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10792745	0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs10898214	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs10898215	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10898216	0.87[ASN][1000 genomes]
rs10898217	0.88[ASN][1000 genomes]
rs10898218	0.88[ASN][1000 genomes]
rs10898219	0.88[ASN][1000 genomes]
rs10898222	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11233953	1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233954	1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs11233956	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs11233963	0.85[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs11233967	0.91[CHB][hapmap];0.92[ASN][1000 genomes]
rs12278134	0.95[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.89[ASN][1000 genomes]
rs12281587	1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1399617	0.95[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs1399618	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.86[ASN][1000 genomes]
rs1454021	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1454023	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs1515084	0.90[CHB][hapmap];0.92[ASN][1000 genomes]
rs1515091	0.87[ASN][1000 genomes]
rs1515092	0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs1515094	0.95[CHB][hapmap];0.82[JPT][hapmap];0.93[ASN][1000 genomes]
rs1849877	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs1869470	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1869471	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1901973	0.88[ASN][1000 genomes]
rs2374526	0.88[ASN][1000 genomes]
rs4354715	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4943889	0.91[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs4944474	0.88[ASN][1000 genomes]
rs7103429	1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7106175	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7112322	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7122248	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7130225	0.95[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs73519747	0.87[ASN][1000 genomes]
rs7483548	0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs7925243	1.00[CHB][hapmap];0.85[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs7933566	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7937925	0.95[CHB][hapmap];0.88[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.93[ASN][1000 genomes]
rs896996	0.95[CHB][hapmap];0.82[JPT][hapmap];0.85[ASN][1000 genomes]
rs896997	0.95[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs896998	0.91[ASN][1000 genomes]
rs930790	0.87[ASN][1000 genomes]
rs963259	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83972000-83979400	Enhancers	Brain Substantia Nigra	brain
2	chr11:83974000-83978400	Enhancers	Brain Anterior Caudate	brain
3	chr11:83975200-83982600	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:83975600-83977000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:83975800-83979600	Enhancers	Brain Angular Gyrus	brain
6	chr11:83976000-83977200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:83976000-83979400	Enhancers	Brain Hippocampus Middle	brain

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