Variant report

Variant	rs1849877
Chromosome Location	chr11:83945764-83945765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10128587	1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs1022308	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs1040131	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10751105	0.81[CHD][hapmap];0.94[JPT][hapmap]
rs10751106	0.94[JPT][hapmap]
rs10751109	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10751112	0.99[ASN][1000 genomes]
rs10792727	0.88[JPT][hapmap]
rs10792731	0.83[CHD][hapmap];0.94[JPT][hapmap]
rs10792740	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.88[MEX][hapmap];0.88[MKK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792742	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10792744	0.91[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.92[ASN][1000 genomes]
rs10792745	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792746	1.00[CHB][hapmap];0.85[CHD][hapmap];0.82[JPT][hapmap];0.81[MEX][hapmap];0.87[ASN][1000 genomes]
rs10898214	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10898215	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.99[ASN][1000 genomes]
rs10898216	1.00[ASN][1000 genomes]
rs10898217	0.99[ASN][1000 genomes]
rs10898218	0.99[ASN][1000 genomes]
rs10898219	0.98[ASN][1000 genomes]
rs10898222	0.95[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs11233953	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11233954	1.00[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs11233956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11233963	0.85[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11233967	0.91[CHB][hapmap];0.92[ASN][1000 genomes]
rs12278134	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.97[ASN][1000 genomes]
rs12281587	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[ASN][1000 genomes]
rs1349820	0.94[JPT][hapmap]
rs1377746	0.89[JPT][hapmap]
rs1377747	0.89[JPT][hapmap]
rs1377748	0.94[JPT][hapmap]
rs1399617	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[MEX][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1399618	0.80[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1454021	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454023	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1454026	0.94[JPT][hapmap]
rs1515084	0.90[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.94[ASN][1000 genomes]
rs1515091	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1515092	0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1515094	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1573572	0.88[JPT][hapmap]
rs1793037	0.89[JPT][hapmap]
rs1793039	0.83[JPT][hapmap]
rs1869470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869471	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[ASN][1000 genomes]
rs1869472	0.88[JPT][hapmap]
rs1901973	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2156848	0.94[JPT][hapmap]
rs2374526	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4354715	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4943889	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4944471	0.94[JPT][hapmap]
rs4944472	0.94[JPT][hapmap]
rs4944474	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7103429	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7106175	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112322	0.85[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7122248	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7130225	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73519747	1.00[ASN][1000 genomes]
rs7483548	0.95[CHB][hapmap];0.82[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.90[ASN][1000 genomes]
rs7925243	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.97[ASN][1000 genomes]
rs7933566	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs7937925	0.95[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs7941004	0.94[JPT][hapmap]
rs7943267	0.89[JPT][hapmap]
rs896996	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs896997	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs896998	0.93[ASN][1000 genomes]
rs930790	1.00[ASN][1000 genomes]
rs963259	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.88[MEX][hapmap];0.83[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs988322	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83941000-83946200	Enhancers	Brain Hippocampus Middle	brain
2	chr11:83944000-83946200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:83944200-83946000	Enhancers	Brain Cingulate Gyrus	brain
4	chr11:83944200-83947800	Enhancers	Brain Substantia Nigra	brain
5	chr11:83944400-83946200	Enhancers	Fetal Muscle Leg	muscle
6	chr11:83944600-83945800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:83944800-83946200	Enhancers	HSMMtube	muscle
8	chr11:83944800-83946400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:83945000-83945800	Enhancers	Brain Angular Gyrus	brain
10	chr11:83945000-83947600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:83945200-83946400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:83945200-83946400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:83945400-83946000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:83945400-83946200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr11:83945400-83946200	Weak transcription	Brain Anterior Caudate	brain
16	chr11:83945400-83961200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:83945600-83946000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:83945600-83946400	Enhancers	HUES64 Cell Line	embryonic stem cell

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