Variant report

Variant	rs7933566
Chromosome Location	chr11:83962251-83962252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10128587	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1022306	1.00[CEU][hapmap]
rs1022308	0.95[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];0.91[ASN][1000 genomes]
rs1040131	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10751105	0.94[JPT][hapmap]
rs10751106	0.94[JPT][hapmap]
rs10751109	1.00[JPT][hapmap]
rs10751112	0.95[ASN][1000 genomes]
rs10792727	0.88[JPT][hapmap]
rs10792731	0.94[JPT][hapmap]
rs10792740	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[YRI][hapmap];0.94[ASN][1000 genomes]
rs10792742	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10792744	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10792745	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10792746	0.95[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs10898214	0.85[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[ASN][1000 genomes]
rs10898215	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs10898216	0.94[ASN][1000 genomes]
rs10898217	0.95[ASN][1000 genomes]
rs10898218	0.95[ASN][1000 genomes]
rs10898219	0.94[ASN][1000 genomes]
rs10898222	0.90[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs11233953	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11233954	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11233956	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11233963	0.81[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11233967	0.86[CHB][hapmap];0.96[ASN][1000 genomes]
rs12278134	0.90[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12281587	0.95[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1349820	0.94[JPT][hapmap]
rs1377746	0.89[JPT][hapmap]
rs1377747	0.89[JPT][hapmap]
rs1377748	0.94[JPT][hapmap]
rs1399617	0.82[ASW][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.82[MKK][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1399618	0.90[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.92[ASN][1000 genomes]
rs1454021	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1454023	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs1454026	0.94[JPT][hapmap]
rs1515084	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515091	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1515092	0.90[CHB][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs1515094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1573572	0.88[JPT][hapmap]
rs1793037	0.89[JPT][hapmap]
rs1793039	0.82[JPT][hapmap]
rs1849877	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes]
rs1869470	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1869471	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs1869472	0.88[JPT][hapmap]
rs1901973	0.95[ASN][1000 genomes]
rs2156848	0.94[JPT][hapmap]
rs2374526	0.92[ASN][1000 genomes]
rs4354715	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs4943889	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4944471	0.94[JPT][hapmap]
rs4944472	0.94[JPT][hapmap]
rs4944474	0.95[ASN][1000 genomes]
rs7103429	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7106175	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7112322	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs7122248	0.95[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs7130225	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73519747	0.94[ASN][1000 genomes]
rs7483548	0.90[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs7925243	0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.92[ASN][1000 genomes]
rs7937925	0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7941004	0.94[JPT][hapmap]
rs7943267	0.89[JPT][hapmap]
rs896996	0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs896997	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs896998	0.95[ASN][1000 genomes]
rs930790	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs963259	0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[ASN][1000 genomes]
rs988322	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7933566	FZD4	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83959200-83963200	Weak transcription	Brain Germinal Matrix	brain
2	chr11:83959600-83965000	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83960200-83962400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:83961200-83963200	Weak transcription	Ovary	ovary
5	chr11:83961200-83964800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:83961400-83962400	Enhancers	HepG2	liver
7	chr11:83961400-83964200	Weak transcription	Aorta	Aorta
8	chr11:83961800-83962800	Enhancers	Liver	Liver
9	chr11:83961800-83964200	Weak transcription	Brain Angular Gyrus	brain
10	chr11:83961800-83967200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:83961800-83969200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:83961800-83969600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:83961800-83974000	Weak transcription	Brain Anterior Caudate	brain
14	chr11:83962000-83962400	Weak transcription	Brain Substantia Nigra	brain

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