Variant report

Variant	rs930790
Chromosome Location	chr11:83935363-83935364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83932523..83935495-chr11:83937155..83939564,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10128587	1.00[ASN][1000 genomes]
rs1022308	0.97[ASN][1000 genomes]
rs1040131	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10751109	0.81[ASN][1000 genomes]
rs10751112	0.99[ASN][1000 genomes]
rs10792740	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10792742	1.00[ASN][1000 genomes]
rs10792744	0.92[ASN][1000 genomes]
rs10792745	0.92[ASN][1000 genomes]
rs10792746	0.87[ASN][1000 genomes]
rs10898214	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10898215	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10898216	1.00[ASN][1000 genomes]
rs10898217	0.99[ASN][1000 genomes]
rs10898218	0.99[ASN][1000 genomes]
rs10898219	0.98[ASN][1000 genomes]
rs10898222	0.87[ASN][1000 genomes]
rs11233953	0.99[ASN][1000 genomes]
rs11233954	1.00[ASN][1000 genomes]
rs11233956	0.99[ASN][1000 genomes]
rs11233963	0.93[ASN][1000 genomes]
rs11233967	0.92[ASN][1000 genomes]
rs12278134	0.97[ASN][1000 genomes]
rs12281587	1.00[ASN][1000 genomes]
rs1399617	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1399618	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1454021	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1454023	1.00[ASN][1000 genomes]
rs1515084	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1515091	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1515092	0.83[ASN][1000 genomes]
rs1515094	0.94[ASN][1000 genomes]
rs1849877	1.00[ASN][1000 genomes]
rs1869470	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1869471	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1901973	0.99[ASN][1000 genomes]
rs2374526	0.98[ASN][1000 genomes]
rs4354715	0.97[ASN][1000 genomes]
rs4943889	0.92[ASN][1000 genomes]
rs4944474	0.99[ASN][1000 genomes]
rs7103429	0.99[ASN][1000 genomes]
rs7106175	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7112322	0.82[ASN][1000 genomes]
rs7122248	0.87[ASN][1000 genomes]
rs7130225	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73519747	1.00[ASN][1000 genomes]
rs7483548	0.90[ASN][1000 genomes]
rs7925243	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7933566	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7937925	0.94[ASN][1000 genomes]
rs896996	0.98[ASN][1000 genomes]
rs896997	0.93[ASN][1000 genomes]
rs896998	0.93[ASN][1000 genomes]
rs963259	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83934800-83936800	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr11:83935000-83936600	Enhancers	Brain Cingulate Gyrus	brain
3	chr11:83935000-83936600	Enhancers	Brain Hippocampus Middle	brain
4	chr11:83935000-83937200	Enhancers	Brain Angular Gyrus	brain
5	chr11:83935000-83937600	Enhancers	Brain Substantia Nigra	brain
6	chr11:83935200-83935400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:83935200-83945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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