Variant report

Variant	rs538468588
Chromosome Location	chr3:135872489-135872490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:135866754..135872495-chr3:135912205..135917619,11	MCF-7	breast:
2	chr3:135861871..135867047-chr3:135867816..135873226,7	K562	blood:
3	chr3:135861871..135864342-chr3:135869780..135872731,2	K562	blood:
4	chr3:135865547..135867656-chr3:135871463..135873226,2	K562	blood:
5	chr3:135871018..135872662-chr3:135874899..135876560,2	MCF-7	breast:
6	chr3:135871355..135873070-chr3:135914710..135916565,2	K562	blood:
7	chr3:135870250..135872855-chr3:135914710..135917326,2	K562	blood:

Variant related genes	Relation type
ENSG00000174579	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869409	chr3:135649101-136164174	Strong transcription Genic enhancers Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv877518	chr3:135861666-135885554	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv967232	chr3:135871526-135887926	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135831400-135874800	Weak transcription	Fetal Brain Male	brain
2	chr3:135843800-135873800	Weak transcription	Colonic Mucosa	Colon
3	chr3:135845600-135880400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:135861600-135873000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:135861800-135873000	Weak transcription	Stomach Mucosa	stomach
6	chr3:135862000-135904800	Weak transcription	Hela-S3	cervix
7	chr3:135864200-135882400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:135864400-135882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:135864400-135885200	Weak transcription	Brain Germinal Matrix	brain
10	chr3:135865600-135882400	Weak transcription	Fetal Heart	heart
11	chr3:135868400-135872800	Strong transcription	Thymus	Thymus
12	chr3:135868800-135883000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:135869000-135876400	Weak transcription	HSMMtube	muscle
14	chr3:135869800-135872600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:135869800-135882400	Weak transcription	Brain Angular Gyrus	brain
16	chr3:135870000-135874000	Weak transcription	A549	lung
17	chr3:135870400-135873200	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:135870400-135874400	Weak transcription	Pancreas	Pancrea
19	chr3:135870400-135876000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:135870400-135881000	Weak transcription	Right Atrium	heart
21	chr3:135870800-135873200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr3:135870800-135895200	Weak transcription	Fetal Intestine Small	intestine
23	chr3:135871000-135872600	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr3:135871000-135873200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:135871000-135873200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:135871000-135873800	Weak transcription	Gastric	stomach
27	chr3:135871000-135874000	Weak transcription	Spleen	Spleen
28	chr3:135871000-135874400	Weak transcription	Lung	lung
29	chr3:135871000-135881800	Weak transcription	Right Ventricle	heart
30	chr3:135871000-135882400	Weak transcription	Esophagus	oesophagus
31	chr3:135871000-135882400	Weak transcription	Small Intestine	intestine
32	chr3:135871000-135897600	Weak transcription	Aorta	Aorta
33	chr3:135871200-135872600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr3:135871200-135873200	Weak transcription	NHDF-Ad	bronchial
35	chr3:135871200-135873600	Weak transcription	Fetal Brain Female	brain
36	chr3:135871200-135873800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:135871200-135874400	Weak transcription	Left Ventricle	heart
38	chr3:135871200-135874600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:135871200-135876000	Weak transcription	Brain Cingulate Gyrus	brain
40	chr3:135871200-135882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:135871200-135905000	Weak transcription	Fetal Stomach	stomach
42	chr3:135871400-135872800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr3:135871400-135873200	Weak transcription	Fetal Intestine Large	intestine
44	chr3:135871400-135873200	Weak transcription	Osteobl	bone
45	chr3:135871400-135873400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr3:135871400-135873400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr3:135871400-135874400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:135871400-135875200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr3:135871400-135880000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr3:135871400-135880200	Weak transcription	Rectal Mucosa Donor 31	rectum

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