Variant report

Variant	rs538849196
Chromosome Location	chr6:28046317-28046318
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:28046317-28046367	NHBE	bronchial:	n/a
2	chr6:28046317-28046367	GM19239	blood:	n/a
3	chr6:28046317-28046367	LNCaP	prostate:	n/a
4	chr6:28046317-28046367	HCM	heart:	n/a
5	chr6:28046317-28046367	HEK293	kidney:	embryo
6	chr6:28046317-28046367	PrEC	prostate:	n/a
7	chr6:28046317-28046367	NT2-D1	testis:	n/a
8	chr6:28046317-28046367	AG10803	skin:	n/a
9	chr6:28046317-28046367	AoSMC	blood vessel:	n/a
10	chr6:28046317-28046367	AG09309	skin:	n/a
11	chr6:28046317-28046367	AG04450	lung:	fetal
12	chr6:28046317-28046367	HEEpiC	esophagus:	n/a
13	chr6:28046317-28046367	GM06990	blood:	n/a
14	chr6:28046317-28046367	HIPEpiC	eye:	n/a
15	chr6:28046317-28046367	GM12892	blood:	n/a
16	chr6:28046317-28046367	Hela-S3	cervix:	n/a
17	chr6:28046317-28046367	BE2_C	brain:	n/a
18	chr6:28046317-28046367	GM12891	blood:	n/a
19	chr6:28046317-28046367	GM12878	blood:	n/a
20	chr6:28046317-28046367	HAEpiC	amniotic membrane:	n/a
21	chr6:28046317-28046367	PFSK-1	brain:	n/a
22	chr6:28046317-28046367	SK-N-SH_RA	brain:	n/a
23	chr6:28046317-28046367	RPTEC	kidney:	n/a
24	chr6:28046317-28046367	HRPEpiC	eye:	n/a
25	chr6:28046317-28046367	U87	brain:	n/a
26	chr6:28046317-28046367	HCT-116	colon:	n/a
27	chr6:28046317-28046367	ProgFib	skin:	n/a
28	chr6:28046317-28046367	A549	lung:	n/a
29	chr6:28046317-28046367	HRE	kidney:	n/a
30	chr6:28046317-28046367	ovcar-3	ovarian:	n/a
31	chr6:28046317-28046367	BJ	skin:	n/a
32	chr6:28046317-28046367	SK-N-SH	brain:	n/a
33	chr6:28046317-28046367	HPAEpiC	pulmonary alveolar:	n/a
34	chr6:28046317-28046367	Jurkat	blood:	n/a
35	chr6:28046317-28046367	IMR90	lung:	fetal
36	chr6:28046317-28046367	HCPEpiC	choroid plexus:	n/a
37	chr6:28046317-28046367	NH-A	brain:	n/a
38	chr6:28046317-28046367	K562	blood:	n/a
39	chr6:28046317-28046367	MCF10A-Er-Src	breast:	n/a
40	chr6:28046317-28046367	ECC-1	luminal epithelium:	n/a
41	chr6:28046317-28046367	HCF	heart:	n/a
42	chr6:28046317-28046367	HNPCEpiC	eye:	n/a
43	chr6:28046317-28046367	PANC-1	pancreas:	n/a
44	chr6:28046317-28046367	H1-hESC	embryonic stem cell:	embryo
45	chr6:28046317-28046367	CMK	blood:	n/a
46	chr6:28046317-28046367	HMEC	breast:	n/a
47	chr6:28046317-28046367	HL-60	blood:	n/a
48	chr6:28046317-28046367	SAEC	small airway:	n/a
49	chr6:28046317-28046367	HRCEpiC	kidney:	n/a
50	chr6:28046317-28046367	Caco-2	colon:	n/a

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28046111..28048022-chr6:28095723..28098620,2	K562	blood:
2	chr6:28044681..28046793-chr6:28367579..28369114,2	K562	blood:
3	chr6:28045344..28046935-chr6:28047195..28048919,2	K562	blood:
4	chr6:28044713..28049958-chr6:28107484..28111355,5	K562	blood:
5	chr6:27864591..27866445-chr6:28044322..28046847,2	K562	blood:

No data

Variant related genes	Relation type
ZNF165	CpG island
ENSG00000238610	Chromatin interaction
ENSG00000272009	Chromatin interaction
ENSG00000197279	Chromatin interaction
ENSG00000198315	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830619	chr6:27872302-28062544	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv33436	chr6:28044346-28049043	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28042600-28046600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:28043200-28047800	Weak transcription	Spleen	Spleen
3	chr6:28045200-28047600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:28045600-28046400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:28045600-28047800	Weak transcription	Right Atrium	heart
6	chr6:28045800-28047800	Weak transcription	Fetal Brain Male	brain
7	chr6:28046000-28047800	Weak transcription	Fetal Heart	heart
8	chr6:28046200-28047000	Enhancers	GM12878-XiMat	blood
9	chr6:28046200-28047400	Enhancers	K562	blood

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