Variant report

Variant	rs538940979
Chromosome Location	chr17:33672656-33672657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574741	chr17:33552275-33827134	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
5	nsv457724	chr17:33609247-33691409	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv574742	chr17:33609247-33691409	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv457725	chr17:33664044-33774159	Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv574743	chr17:33664044-33774159	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv515566	chr17:33664818-33768199	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1066569	chr17:33671156-33758566	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1062610	chr17:33671466-33758566	Weak transcription Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33672000-33674200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr17:33672200-33672800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:33672200-33672800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr17:33672200-33672800	Bivalent Enhancer	Fetal Thymus	thymus
5	chr17:33672200-33673000	Enhancers	Spleen	Spleen
6	chr17:33672200-33674200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr17:33672400-33672800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:33672400-33672800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:33672400-33673000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:33672400-33673000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:33672400-33673000	Enhancers	Liver	Liver
12	chr17:33672400-33673000	Enhancers	Gastric	stomach
13	chr17:33672400-33673000	Flanking Active TSS	Left Ventricle	heart
14	chr17:33672400-33673200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:33672400-33673200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr17:33672400-33673600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
17	chr17:33672400-33673800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
18	chr17:33672400-33674000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr17:33672400-33674000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
20	chr17:33672400-33674000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
21	chr17:33672400-33674000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr17:33672400-33674000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
23	chr17:33672400-33674000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
24	chr17:33672400-33674000	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr17:33672400-33674000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
26	chr17:33672400-33674000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr17:33672400-33674000	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
28	chr17:33672400-33674000	Active TSS	Right Atrium	heart
29	chr17:33672400-33674200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr17:33672400-33674200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr17:33672400-33674200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
32	chr17:33672400-33674200	Flanking Active TSS	Adipose Nuclei	Adipose
33	chr17:33672400-33674400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr17:33672600-33672800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr17:33672600-33672800	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:33672600-33672800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr17:33672600-33672800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr17:33672600-33672800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:33672600-33672800	Enhancers	Primary B cells from peripheral blood	blood
40	chr17:33672600-33672800	Active TSS	Primary T cells from cord blood	blood
41	chr17:33672600-33672800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr17:33672600-33672800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr17:33672600-33672800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr17:33672600-33672800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr17:33672600-33672800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr17:33672600-33672800	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
47	chr17:33672600-33672800	Bivalent Enhancer	Fetal Stomach	stomach
48	chr17:33672600-33672800	Flanking Active TSS	Ovary	ovary
49	chr17:33672600-33672800	Enhancers	Pancreas	Pancrea
50	chr17:33672600-33672800	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion

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