Variant report

Variant	rs539035411
Chromosome Location	chr9:16386418-16386419
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530933	chr9:16251206-16830845	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv892644	chr9:16275107-16389006	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv530934	chr9:16281246-16779432	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv466264	chr9:16359608-16390629	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
6	nsv613669	chr9:16359608-16390629	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	esv2762798	chr9:16385811-16389383	Enhancers Flanking Active TSS Weak transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16385200-16387000	Enhancers	NHDF-Ad	bronchial
2	chr9:16385400-16386600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr9:16385400-16386800	Enhancers	HSMM	muscle
4	chr9:16385400-16387000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:16385400-16387000	Enhancers	Osteobl	bone
6	chr9:16385600-16386600	Enhancers	NH-A	brain
7	chr9:16385600-16386800	Enhancers	NHLF	lung
8	chr9:16385600-16387000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:16385800-16386800	Enhancers	Adipose Nuclei	Adipose
10	chr9:16386000-16386800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:16386000-16386800	Enhancers	A549	lung
12	chr9:16386000-16387000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr9:16386000-16387000	Enhancers	HMEC	breast
14	chr9:16386200-16386600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr9:16386200-16387000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:16386200-16387200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:16386200-16388600	Weak transcription	Fetal Stomach	stomach
18	chr9:16386400-16387000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:16386400-16387000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:16386400-16387000	Enhancers	Hela-S3	cervix

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