Variant report

Variant	rs539090101
Chromosome Location	chr3:145860574-145860575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525829	chr3:145614317-145863779	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv4046	chr3:145693249-145880189	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv877613	chr3:145833232-145912055	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1011146	chr3:145859022-145911429	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145832000-145870800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:145835800-145874000	Weak transcription	Psoas Muscle	Psoas
3	chr3:145840400-145874000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:145843600-145861200	Weak transcription	Right Ventricle	heart
5	chr3:145844600-145860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:145850400-145864400	Weak transcription	HMEC	breast
7	chr3:145851600-145864200	Weak transcription	Right Atrium	heart
8	chr3:145852800-145860600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:145853200-145861600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr3:145855800-145862000	Enhancers	Fetal Stomach	stomach
11	chr3:145856000-145861400	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:145856200-145862200	Enhancers	Fetal Heart	heart
13	chr3:145856400-145861200	Weak transcription	HepG2	liver
14	chr3:145856400-145864200	Weak transcription	Left Ventricle	heart
15	chr3:145856400-145875800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr3:145857800-145860600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:145858000-145861800	Enhancers	A549	lung
18	chr3:145858200-145860600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:145858600-145860600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr3:145858800-145860600	Weak transcription	Small Intestine	intestine
21	chr3:145858800-145861000	Enhancers	Brain Anterior Caudate	brain
22	chr3:145858800-145866400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr3:145859200-145862000	Enhancers	NHLF	lung
24	chr3:145859400-145860600	Weak transcription	Liver	Liver
25	chr3:145860000-145861000	Enhancers	Fetal Intestine Large	intestine
26	chr3:145860000-145863000	Genic enhancers	Osteobl	bone
27	chr3:145860200-145860600	Enhancers	Brain Hippocampus Middle	brain
28	chr3:145860200-145860600	Flanking Active TSS	Colon Smooth Muscle	Colon
29	chr3:145860200-145860600	Active TSS	Ovary	ovary
30	chr3:145860200-145860800	Enhancers	Brain Cingulate Gyrus	brain
31	chr3:145860200-145861000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr3:145860200-145861000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr3:145860200-145861400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr3:145860200-145861400	Enhancers	NHDF-Ad	bronchial
35	chr3:145860200-145861600	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr3:145860200-145861800	Enhancers	Fetal Intestine Small	intestine
37	chr3:145860200-145861800	Enhancers	HSMM	muscle
38	chr3:145860200-145861800	Enhancers	HSMMtube	muscle
39	chr3:145860200-145862000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr3:145860200-145862000	Enhancers	Fetal Lung	lung
41	chr3:145860200-145862000	Enhancers	HUVEC	blood vessel
42	chr3:145860400-145860600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr3:145860400-145860800	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr3:145860400-145860800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr3:145860400-145860800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr3:145860400-145860800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr3:145860400-145860800	Enhancers	Aorta	Aorta
48	chr3:145860400-145860800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr3:145860400-145860800	Enhancers	Fetal Brain Female	brain
50	chr3:145860400-145860800	Flanking Active TSS	Stomach Smooth Muscle	stomach

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