Variant report

Variant	rs539526933
Chromosome Location	chr4:152341204-152341205
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152337823..152339848-chr4:152340887..152343384,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1025192	chr4:152202627-152498890	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537307	chr4:152202627-152498890	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv880624	chr4:152280646-152549112	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv432643	chr4:152335395-152417635	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2611953	chr4:152340150-152342335	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3466395	chr4:152340328-152341939	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3500697	chr4:152340389-152341996	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2051581	chr4:152340510-152341768	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3392187	chr4:152340607-152341639	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3500698	chr4:152340617-152341665	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3500701	chr4:152340620-152341639	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3500700	chr4:152340637-152341589	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3466394	chr4:152340646-152341623	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3466400	chr4:152340648-152341624	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3500699	chr4:152340655-152341610	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3466398	chr4:152340657-152341579	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3948	chr4:152340657-152341662	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3500703	chr4:152340667-152341600	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3343737	chr4:152340675-152341580	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3466399	chr4:152340689-152341562	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3466401	chr4:152340706-152341570	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3500704	chr4:152340706-152341570	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3500702	chr4:152340707-152341555	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152332000-152347600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:152338400-152341800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr4:152338400-152362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:152338600-152342200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:152338600-152342400	Enhancers	HMEC	breast
6	chr4:152339800-152351800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:152340000-152342200	Enhancers	HUVEC	blood vessel
8	chr4:152340000-152349600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr4:152340200-152341800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:152340400-152341400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:152340400-152341600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:152340400-152341600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:152340400-152341600	Weak transcription	NH-A	brain
14	chr4:152340400-152343000	Enhancers	NHEK	skin
15	chr4:152340600-152341600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:152340600-152341600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:152340600-152341600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:152340600-152341600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:152340600-152341600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:152340600-152341600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr4:152340600-152341600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr4:152340600-152341600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:152340600-152341600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:152340600-152341600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:152340600-152341600	Weak transcription	HSMM	muscle
26	chr4:152340600-152341600	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:152340600-152341800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:152340600-152341800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:152340600-152341800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:152340600-152344000	Weak transcription	Small Intestine	intestine
31	chr4:152340600-152347000	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr4:152340600-152353000	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:152340800-152341800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:152340800-152342800	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr4:152341000-152341400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr4:152341200-152342400	Enhancers	Psoas Muscle	Psoas

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