Variant report

Variant	rs539657584
Chromosome Location	chr11:9026556-9026557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF3	chr11:9026517-9026696	GM12878	blood:	n/a	n/a
2	E2F6	chr11:9024972-9026595	H1-hESC	embryonic stem cell:	n/a	chr11:9026285-9026294 chr11:9025568-9025575 chr11:9025293-9025302
3	MAX	chr11:9025027-9026564	H1-hESC	embryonic stem cell:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119 chr11:9026527-9026535 chr11:9026257-9026266 chr11:9026302-9026311
4	MAX	chr11:9025042-9026568	H1-hESC	embryonic stem cell:	n/a	chr11:9026108-9026121 chr11:9026109-9026120 chr11:9026110-9026119 chr11:9026110-9026119 chr11:9026527-9026535 chr11:9026257-9026266 chr11:9026302-9026311

No.	Distal block	Cell Line	Cell type
1	chr11:8713787..8716446-chr11:9025116..9027150,2	K562	blood:
2	chr11:8930312..8933119-chr11:9023959..9026944,2	K562	blood:
3	chr11:8930312..8934560-chr11:9023959..9026944,3	K562	blood:

Variant related genes	Relation type
NRIP3	TF binding region
ENSG00000166444	Chromatin interaction
ENSG00000166452	Chromatin interaction
ENSG00000254665	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
5	esv3354735	chr11:9024401-9026949	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv3357823	chr11:9026347-9027351	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9023800-9026600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr11:9024400-9026600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr11:9024600-9026600	Bivalent Enhancer	Fetal Brain Male	brain
4	chr11:9024600-9027000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:9024800-9026600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:9025000-9026600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr11:9025000-9026600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr11:9025200-9026600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:9025200-9026600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
10	chr11:9025200-9026600	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr11:9025200-9026600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:9025200-9027000	Active TSS	Brain Angular Gyrus	brain
13	chr11:9025200-9027000	Active TSS	Brain Anterior Caudate	brain
14	chr11:9025400-9026600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chr11:9025400-9026600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr11:9025400-9026600	Enhancers	Fetal Heart	heart
17	chr11:9025400-9026800	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr11:9025400-9027000	Active TSS	Brain Cingulate Gyrus	brain
19	chr11:9026000-9026600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:9026200-9026600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr11:9026200-9026600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:9026200-9026600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr11:9026200-9026600	Bivalent Enhancer	Fetal Thymus	thymus
24	chr11:9026200-9026800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
25	chr11:9026200-9027800	Weak transcription	Lung	lung
26	chr11:9026200-9034800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:9026200-9038800	Weak transcription	Right Atrium	heart
28	chr11:9026400-9026600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
29	chr11:9026400-9026600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
30	chr11:9026400-9026600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:9026400-9026600	Bivalent/Poised TSS	Primary T cells from cord blood	blood
32	chr11:9026400-9026600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr11:9026400-9027000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:9026400-9037400	Weak transcription	Stomach Smooth Muscle	stomach

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