Variant report

Variant	rs539703866
Chromosome Location	chr15:58821315-58821316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58821255..58823179-chr15:58836509..58838748,2	K562	blood:
2	chr15:58815957..58817851-chr15:58819397..58821378,2	MCF-7	breast:
3	chr15:58815189..58818138-chr15:58821018..58822626,2	K562	blood:
4	chr15:58819426..58821702-chr15:58824237..58826443,2	K562	blood:
5	chr15:58819551..58822537-chr15:58827877..58830479,4	MCF-7	breast:
6	chr15:58816638..58820223-chr15:58821126..58823355,3	K562	blood:
7	chr15:58814659..58816490-chr15:58819397..58821413,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv524098	chr15:58820978-58834391	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58817600-58821600	Enhancers	Right Ventricle	heart
2	chr15:58817600-58822000	Enhancers	Pancreas	Pancrea
3	chr15:58818000-58821400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:58818000-58821400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:58818000-58825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:58818200-58821600	Enhancers	Right Atrium	heart
7	chr15:58818400-58821600	Enhancers	Adipose Nuclei	Adipose
8	chr15:58818600-58822600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:58819000-58821600	Enhancers	Stomach Mucosa	stomach
10	chr15:58819200-58821400	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:58819200-58821400	Enhancers	Placenta	Placenta
12	chr15:58819200-58821400	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr15:58819600-58821400	Enhancers	Ovary	ovary
14	chr15:58819600-58821600	Enhancers	Brain Substantia Nigra	brain
15	chr15:58819600-58821600	Enhancers	Fetal Muscle Leg	muscle
16	chr15:58819800-58821400	Enhancers	Hela-S3	cervix
17	chr15:58820000-58821400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr15:58820000-58821600	Enhancers	Stomach Smooth Muscle	stomach
19	chr15:58820200-58821400	Weak transcription	Psoas Muscle	Psoas
20	chr15:58820200-58821600	Enhancers	Fetal Muscle Trunk	muscle
21	chr15:58820200-58823400	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr15:58820400-58824000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:58820600-58822400	Enhancers	HepG2	liver
24	chr15:58820800-58822000	Enhancers	Esophagus	oesophagus
25	chr15:58821000-58826400	Weak transcription	Colonic Mucosa	Colon
26	chr15:58821000-58827400	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr15:58821200-58821400	Enhancers	Fetal Heart	heart
28	chr15:58821200-58821400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:58821200-58821600	Enhancers	A549	lung
30	chr15:58821200-58822000	Weak transcription	Spleen	Spleen
31	chr15:58821200-58823200	Enhancers	Liver	Liver
32	chr15:58821200-58824400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr15:58821200-58824400	Weak transcription	Gastric	stomach
34	chr15:58821200-58832200	Weak transcription	Fetal Kidney	kidney

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