Variant report

Variant rs539927762
Chromosome Location chr17:18314275-18314276
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:18312200-18314400 Enhancers Primary T cells from cord blood blood
2 chr17:18312600-18315400 Active TSS Brain Germinal Matrix brain
3 chr17:18312800-18314800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr17:18313000-18315400 Active TSS Fetal Brain Female brain
5 chr17:18313000-18315400 Active TSS Fetal Stomach stomach
6 chr17:18313200-18315400 Active TSS Fetal Thymus thymus
7 chr17:18313400-18315400 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr17:18313400-18315400 Active TSS HUES6 Cell Line embryonic stem cell
9 chr17:18313400-18315400 Active TSS iPS-15b Cell Line embryonic stem cell
10 chr17:18313400-18315400 Active TSS iPS-20b Cell Line embryonic stem cell
11 chr17:18313400-18315400 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
12 chr17:18313400-18315400 Active TSS Thymus Thymus
13 chr17:18313600-18314400 Flanking Active TSS Dnd41 blood
14 chr17:18313600-18315400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr17:18313600-18315400 Active TSS HUES64 Cell Line embryonic stem cell
16 chr17:18313600-18315400 Active TSS A549 lung
17 chr17:18313600-18315400 Active TSS NH-A brain
18 chr17:18313800-18315200 Active TSS Colon Smooth Muscle Colon
19 chr17:18313800-18315200 Active TSS Fetal Brain Male brain
20 chr17:18313800-18315400 Active TSS ES-I3 Cell Line embryonic stem cell
21 chr17:18313800-18315400 Active TSS H9 Cell Line embryonic stem cell
22 chr17:18313800-18315400 Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr17:18313800-18315400 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
24 chr17:18313800-18315400 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
25 chr17:18313800-18315400 Active TSS iPS-18 Cell Line embryonic stem cell
26 chr17:18313800-18315400 Active TSS ES-UCSF4 Cell Line embryonic stem cell
27 chr17:18313800-18315400 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr17:18313800-18315400 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr17:18313800-18315400 Active TSS Cortex derived primary cultured neurospheres brain
30 chr17:18313800-18315400 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
31 chr17:18313800-18315400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
32 chr17:18313800-18315400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr17:18313800-18315400 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
34 chr17:18313800-18315400 Active TSS Adipose Nuclei Adipose
35 chr17:18313800-18315400 Active TSS Fetal Intestine Small intestine
36 chr17:18313800-18315400 Active TSS Fetal Kidney kidney
37 chr17:18313800-18315400 Active TSS Fetal Lung lung
38 chr17:18313800-18315400 Active TSS Fetal Muscle Trunk muscle
39 chr17:18313800-18315400 Active TSS Fetal Muscle Leg muscle
40 chr17:18313800-18315400 Active TSS NHLF lung
41 chr17:18313800-18316600 Active TSS HUES48 Cell Line embryonic stem cell
42 chr17:18313800-18316800 Active TSS H1 Cell Line embryonic stem cell
43 chr17:18314000-18314400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
44 chr17:18314000-18314400 Enhancers Fetal Heart heart
45 chr17:18314000-18314600 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
46 chr17:18314000-18314800 Enhancers Primary B cells from cord blood blood
47 chr17:18314000-18315200 Active TSS Brain Inferior Temporal Lobe brain
48 chr17:18314000-18315200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
49 chr17:18314000-18315200 Active TSS Duodenum Mucosa Duodenum
50 chr17:18314000-18315400 Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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