Variant report

Variant	rs540065855
Chromosome Location	chr20:23901190-23901191
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23895606..23897789-chr20:23899245..23901665,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491876	chr20:23436633-24031374	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833944	chr20:23806288-24021865	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3432957	chr20:23858584-23901200	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1062441	chr20:23861343-23955100	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3437111	chr20:23898252-23902550	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv979494	chr20:23900040-23910180	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23897400-23903000	Enhancers	Fetal Muscle Trunk	muscle
2	chr20:23897400-23903200	Enhancers	Fetal Muscle Leg	muscle
3	chr20:23898600-23903200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr20:23899000-23902600	Enhancers	Fetal Thymus	thymus
5	chr20:23899400-23903400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr20:23899600-23903000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr20:23899800-23902000	Enhancers	Primary T cells from cord blood	blood
8	chr20:23899800-23902000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr20:23899800-23902200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr20:23899800-23902800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr20:23900000-23902000	Enhancers	Stomach Smooth Muscle	stomach
12	chr20:23900000-23902200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
13	chr20:23900000-23902400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr20:23900000-23902400	Enhancers	Esophagus	oesophagus
15	chr20:23900000-23902600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr20:23900000-23902800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr20:23900000-23902800	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr20:23900200-23901200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr20:23900200-23901400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr20:23900200-23901800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr20:23900200-23901800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr20:23900200-23901800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr20:23900200-23901800	Enhancers	HMEC	breast
24	chr20:23900200-23902000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr20:23900200-23902000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr20:23900200-23902200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr20:23900200-23902200	Enhancers	HSMMtube	muscle
28	chr20:23900400-23901200	Enhancers	Brain Cingulate Gyrus	brain
29	chr20:23900400-23901200	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr20:23900400-23901200	Enhancers	Placenta Amnion	Placenta Amnion
31	chr20:23900400-23901200	Enhancers	Thymus	Thymus
32	chr20:23900400-23901400	Enhancers	NHEK	skin
33	chr20:23900400-23901600	Enhancers	Osteobl	bone
34	chr20:23900400-23902000	Enhancers	Placenta	Placenta
35	chr20:23900400-23902200	Enhancers	NHDF-Ad	bronchial
36	chr20:23900400-23902400	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr20:23900600-23901200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr20:23900600-23901400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr20:23900600-23901400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr20:23900600-23901600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr20:23900600-23901600	Weak transcription	Brain Angular Gyrus	brain
42	chr20:23900600-23901600	Weak transcription	Right Atrium	heart
43	chr20:23900600-23901800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr20:23900600-23902200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr20:23900800-23901200	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr20:23900800-23901400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr20:23900800-23901800	Enhancers	Colon Smooth Muscle	Colon
48	chr20:23900800-23901800	Weak transcription	Lung	lung
49	chr20:23900800-23902400	Enhancers	Fetal Stomach	stomach
50	chr20:23901000-23901400	Weak transcription	Brain Anterior Caudate	brain

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