Variant report

Variant	rs540168416
Chromosome Location	chr8:47742692-47742693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr8:47742428-47742848	GM12878	blood:	n/a	n/a
2	SP1	chr8:47742474-47742841	HepG2	liver:	n/a	chr8:47742522-47742532 chr8:47742522-47742532
3	TCF12	chr8:47742548-47742701	GM12878	blood:	n/a	n/a
4	EBF1	chr8:47742556-47742800	GM12878	blood:	n/a	n/a
5	CEBPD	chr8:47742550-47742858	K562	blood:	n/a	n/a
6	PAX5	chr8:47742558-47742695	GM12878	blood:	n/a	n/a
7	ZBTB33	chr8:47742579-47742717	HepG2	liver:	n/a	n/a
8	JUND	chr8:47742575-47742715	HepG2	liver:	n/a	n/a
9	SP1	chr8:47742496-47742872	GM12878	blood:	n/a	chr8:47742522-47742532 chr8:47742522-47742532
10	GATA2	chr8:47742535-47742760	K562	blood:	n/a	n/a
11	ZBTB33	chr8:47742534-47742843	HepG2	liver:	n/a	n/a
12	ZBTB33	chr8:47742455-47742722	GM12878	blood:	n/a	n/a
13	IRF4	chr8:47742425-47742741	GM12878	blood:	n/a	n/a
14	POLR2A	chr8:47742477-47742839	H1-hESC	embryonic stem cell:	n/a	n/a
15	BATF	chr8:47742552-47742702	GM12878	blood:	n/a	n/a
16	SPI1	chr8:47742530-47742779	K562	blood:	n/a	n/a
17	ZBTB33	chr8:47742134-47742902	GM12878	blood:	n/a	n/a
18	POLR2A	chr8:47742531-47742790	Hela-S3	cervix:	n/a	n/a
19	SIX5	chr8:47742533-47742715	K562	blood:	n/a	n/a
20	SPI1	chr8:47742574-47742726	GM12878	blood:	n/a	n/a
21	HEY1	chr8:47742426-47742713	K562	blood:	n/a	n/a
22	SPI1	chr8:47742554-47742817	GM12878	blood:	n/a	n/a
23	POU2F2	chr8:47742572-47742708	GM12878	blood:	n/a	n/a
24	BHLHE40	chr8:47742538-47742866	HepG2	liver:	n/a	n/a
25	SIX5	chr8:47742509-47742810	K562	blood:	n/a	n/a
26	SP1	chr8:47742497-47742799	GM12878	blood:	n/a	chr8:47742522-47742532 chr8:47742522-47742532
27	USF1	chr8:47742553-47742718	HepG2	liver:	n/a	n/a
28	BCL11A	chr8:47742558-47742696	GM12878	blood:	n/a	n/a
29	GABPA	chr8:47742519-47742798	Hela-S3	cervix:	n/a	n/a
30	SIN3AK20	chr8:47742556-47742699	HepG2	liver:	n/a	n/a
31	BATF	chr8:47742543-47742780	GM12878	blood:	n/a	n/a
32	HEY1	chr8:47742536-47742820	HepG2	liver:	n/a	n/a
33	EBF1	chr8:47742531-47742706	GM12878	blood:	n/a	n/a
34	JUND	chr8:47742560-47742695	HepG2	liver:	n/a	n/a
35	ZBTB33	chr8:47742525-47742872	K562	blood:	n/a	n/a
36	HEY1	chr8:47742572-47742706	HepG2	liver:	n/a	n/a
37	PAX5	chr8:47742429-47742899	GM12878	blood:	n/a	n/a
38	FOSL2	chr8:47742537-47742805	HepG2	liver:	n/a	n/a
39	TCF12	chr8:47742549-47742707	HepG2	liver:	n/a	n/a
40	RXRA	chr8:47742488-47742788	HepG2	liver:	n/a	n/a
41	EP300	chr8:47742529-47742820	GM12878	blood:	n/a	n/a
42	FOSL2	chr8:47742026-47742906	HepG2	liver:	n/a	n/a
43	BCL11A	chr8:47742493-47742715	GM12878	blood:	n/a	n/a
44	PAX5	chr8:47742540-47742714	GM12878	blood:	n/a	n/a
45	PAX5	chr8:47742557-47742726	GM12878	blood:	n/a	n/a
46	POU2F2	chr8:47742526-47742869	GM12878	blood:	n/a	n/a
47	SIX5	chr8:47742144-47742725	GM12878	blood:	n/a	n/a
48	PBX3	chr8:47742572-47742762	GM12878	blood:	n/a	n/a
49	FOXA1	chr8:47742514-47742733	HepG2	liver:	n/a	n/a
50	RXRA	chr8:47742494-47742757	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MTND1P7	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:32 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032451	chr8:46847522-47743250	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018479	chr8:46847522-47776897	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	esv2761184	chr8:46847534-47743262	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1031161	chr8:46919261-47743250	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1025020	chr8:46924110-47743250	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv916550	chr8:46942962-47863337	Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv1016829	chr8:47083849-47982647	Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
8	nsv465669	chr8:47105157-47947701	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv611241	chr8:47105157-47947701	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv948803	chr8:47190621-47939976	Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv1025638	chr8:47361534-48176434	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
12	nsv530881	chr8:47456285-48129198	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
13	nsv1020467	chr8:47456484-48174712	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
14	nsv539589	chr8:47456484-48174712	Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
15	nsv869142	chr8:47456485-47982673	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	nsv1028036	chr8:47531749-48256108	Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
17	nsv1019289	chr8:47536056-48251883	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
18	nsv539591	chr8:47536056-48251883	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
19	nsv1015812	chr8:47546083-47743250	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv1034527	chr8:47555136-47751637	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
21	nsv539592	chr8:47555136-47751637	Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv1016400	chr8:47555136-47797723	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
23	nsv1032030	chr8:47555136-47823661	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
24	nsv530882	chr8:47620846-48223868	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
25	nsv971304	chr8:47695933-47777473	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	9 gene(s)	inside rSNPs	diseases
26	nsv1015347	chr8:47698082-48318579	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
27	nsv539593	chr8:47698082-48318579	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
28	nsv1028897	chr8:47722290-47801967	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
29	esv20376	chr8:47725589-47775860	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
30	nsv1034185	chr8:47727123-47767022	ZNF genes & repeats Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
31	esv14608	chr8:47739081-47750528	Inactive region	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
32	nsv512047	chr8:47742412-47750207	Inactive region	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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