Variant report

Variant	rs540169219
Chromosome Location	chr8:99699520-99699521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	esv2652228	chr8:99698427-99699863	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99676200-99738200	Weak transcription	Fetal Kidney	kidney
2	chr8:99676400-99700000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr8:99683400-99699600	Weak transcription	Fetal Stomach	stomach
4	chr8:99683400-99701600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:99683400-99712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:99683600-99712200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:99683600-99720400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:99683600-99738000	Weak transcription	NHEK	skin
9	chr8:99684400-99704000	Weak transcription	Liver	Liver
10	chr8:99684400-99712600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:99689400-99703800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:99692800-99705400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:99694400-99700800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:99695200-99714600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:99695400-99705600	Weak transcription	Small Intestine	intestine
16	chr8:99696000-99712000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:99698400-99700000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:99698800-99700000	ZNF genes & repeats	Fetal Muscle Leg	muscle
19	chr8:99698800-99700200	ZNF genes & repeats	GM12878-XiMat	blood
20	chr8:99699200-99700200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr8:99699200-99700200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
22	chr8:99699400-99699600	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr8:99699400-99699800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr8:99699400-99699800	ZNF genes & repeats	Aorta	Aorta
25	chr8:99699400-99699800	ZNF genes & repeats	Brain Substantia Nigra	brain
26	chr8:99699400-99699800	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr8:99699400-99699800	ZNF genes & repeats	Placenta	Placenta
28	chr8:99699400-99699800	ZNF genes & repeats	Left Ventricle	heart
29	chr8:99699400-99699800	ZNF genes & repeats	Lung	lung
30	chr8:99699400-99699800	ZNF genes & repeats	Ovary	ovary
31	chr8:99699400-99699800	ZNF genes & repeats	Pancreas	Pancrea
32	chr8:99699400-99699800	ZNF genes & repeats	NHDF-Ad	bronchial
33	chr8:99699400-99700200	ZNF genes & repeats	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links