Variant report

Variant rs540169751
Chromosome Location chr5:58654427-58654428
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:65 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:58652200-58654800 Enhancers ES-I3 Cell Line embryonic stem cell
2 chr5:58652200-58654800 Enhancers iPS-15b Cell Line embryonic stem cell
3 chr5:58652200-58655000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
4 chr5:58652200-58655000 Enhancers Fetal Intestine Small intestine
5 chr5:58652200-58656200 Enhancers iPS-18 Cell Line embryonic stem cell
6 chr5:58652200-58656600 Enhancers HUES48 Cell Line embryonic stem cell
7 chr5:58652400-58654800 Enhancers H1 Cell Line embryonic stem cell
8 chr5:58652400-58655000 Enhancers Stomach Mucosa stomach
9 chr5:58652400-58655200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr5:58652400-58655200 Enhancers Fetal Kidney kidney
11 chr5:58652400-58655800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
12 chr5:58652400-58656400 Enhancers HUES64 Cell Line embryonic stem cell
13 chr5:58652600-58654600 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr5:58652600-58654600 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr5:58652600-58654600 Enhancers Fetal Muscle Leg muscle
16 chr5:58652600-58654600 Enhancers Fetal Stomach stomach
17 chr5:58652600-58654600 Enhancers Fetal Thymus thymus
18 chr5:58652600-58654600 Enhancers Pancreas Pancrea
19 chr5:58652600-58654800 Enhancers Fetal Adrenal Gland Adrenal Gland
20 chr5:58652600-58654800 Enhancers Gastric stomach
21 chr5:58652600-58654800 Enhancers Placenta Amnion Placenta Amnion
22 chr5:58652600-58655000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
23 chr5:58652600-58655000 Enhancers Brain Hippocampus Middle brain
24 chr5:58652600-58655000 Enhancers Brain Inferior Temporal Lobe brain
25 chr5:58652600-58655200 Enhancers Fetal Brain Male brain
26 chr5:58652600-58655800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
27 chr5:58652800-58654600 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
28 chr5:58652800-58654600 Enhancers Primary Natural Killer cells fromperipheralblood blood
29 chr5:58652800-58656400 Enhancers HUES6 Cell Line embryonic stem cell
30 chr5:58653000-58654600 Enhancers Right Atrium heart
31 chr5:58653000-58669400 Weak transcription Primary hematopoietic stem cells short term culture blood
32 chr5:58653200-58654600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
33 chr5:58653200-58654800 Enhancers Brain Dorsolateral Prefrontal Cortex brain
34 chr5:58653200-58656000 Enhancers Primary neutrophils fromperipheralblood blood
35 chr5:58653400-58654600 Flanking Active TSS Stomach Smooth Muscle stomach
36 chr5:58653400-58655600 Weak transcription Psoas Muscle Psoas
37 chr5:58653600-58654600 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
38 chr5:58653600-58654600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
39 chr5:58653600-58654600 Active TSS Brain Substantia Nigra brain
40 chr5:58653600-58654600 Flanking Active TSS Rectal Smooth Muscle rectum
41 chr5:58653600-58654800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
42 chr5:58653600-58654800 Enhancers Brain Anterior Caudate brain
43 chr5:58653600-58655000 Enhancers Fetal Brain Female brain
44 chr5:58653600-58655600 Weak transcription Primary monocytes fromperipheralblood blood
45 chr5:58653600-58657800 Enhancers Fetal Heart heart
46 chr5:58653800-58654600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr5:58653800-58654800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr5:58653800-58655000 Enhancers Brain Germinal Matrix brain
49 chr5:58653800-58655200 Enhancers Brain Cingulate Gyrus brain
50 chr5:58653800-58655200 Flanking Active TSS A549 lung

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