Variant report

Variant	rs540228225
Chromosome Location	chr9:16112-16113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982187	chr9:10001-32355	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv8400	chr9:10001-51412	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891939	chr9:10001-129899	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
4	esv16986	chr9:10485-25682	Genic enhancers Bivalent/Poised TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv19929	chr9:10485-48531	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv949672	chr9:13091-274606	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
7	nsv948701	chr9:13091-499586	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
8	nsv949346	chr9:13091-776349	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv982355	chr9:13840-19662	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv471464	chr9:14511-29739	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv482128	chr9:14511-29739	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:10400-21600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:11200-21600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:11400-20800	Weak transcription	Thymus	Thymus
4	chr9:11800-21600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:12000-21600	Weak transcription	Spleen	Spleen
6	chr9:12800-21600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:12800-28800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:13000-21800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:14400-22200	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:14400-28800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr9:14400-28800	Weak transcription	Fetal Intestine Large	intestine
12	chr9:14600-21600	Weak transcription	Left Ventricle	heart
13	chr9:14600-28600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr9:14600-28600	Weak transcription	K562	blood
15	chr9:14600-28800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:14800-19000	Weak transcription	Gastric	stomach
17	chr9:14800-21200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:14800-28600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:14800-28800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr9:14800-28800	Weak transcription	Fetal Stomach	stomach
21	chr9:14800-28800	Weak transcription	Pancreas	Pancrea
22	chr9:14800-28800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:15000-21600	Weak transcription	Lung	lung
24	chr9:15600-28800	Weak transcription	Fetal Brain Female	brain

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