Variant report

Variant	rs540294388
Chromosome Location	chr6:24053252-24053253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv462660	chr6:24052526-24080370	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv601145	chr6:24052526-24080370	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24052000-24054200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:24052200-24053600	Enhancers	Fetal Muscle Leg	muscle
3	chr6:24052200-24054000	Enhancers	Fetal Brain Female	brain
4	chr6:24052400-24054000	Enhancers	Brain Germinal Matrix	brain
5	chr6:24052600-24054000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:24052800-24053800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:24052800-24053800	Enhancers	Brain Substantia Nigra	brain
8	chr6:24052800-24054000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:24052800-24054000	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:24052800-24054000	Enhancers	Brain Hippocampus Middle	brain
11	chr6:24052800-24054000	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr6:24052800-24054200	Enhancers	Fetal Brain Male	brain
13	chr6:24053000-24053400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:24053000-24053800	Enhancers	Brain Anterior Caudate	brain
15	chr6:24053000-24053800	Enhancers	Pancreas	Pancrea
16	chr6:24053200-24053800	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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