Variant report

Variant rs540368352
Chromosome Location chr5:180261582-180261583
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:180259000-180264400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:180259000-180272600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr5:180259400-180261600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr5:180259400-180261600 Weak transcription Fetal Intestine Large intestine
5 chr5:180259400-180261600 Weak transcription Ovary ovary
6 chr5:180259400-180262200 Weak transcription HSMMtube muscle
7 chr5:180259400-180263600 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr5:180259400-180271400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr5:180259400-180273600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:180259600-180262000 Weak transcription HSMM muscle
11 chr5:180259600-180264600 Weak transcription HMEC breast
12 chr5:180259600-180272400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr5:180259600-180272600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
14 chr5:180259800-180262000 Weak transcription Fetal Brain Female brain
15 chr5:180259800-180262000 Weak transcription Fetal Lung lung
16 chr5:180259800-180276800 Weak transcription Pancreatic Islets Pancreatic Islet
17 chr5:180260000-180261600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
18 chr5:180260000-180261600 Weak transcription Primary neutrophils fromperipheralblood blood
19 chr5:180260000-180261600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
20 chr5:180260000-180261600 Weak transcription Rectal Mucosa Donor 31 rectum
21 chr5:180260000-180261600 Weak transcription Right Ventricle heart
22 chr5:180260000-180261600 Weak transcription A549 lung
23 chr5:180260000-180261600 Weak transcription Osteobl bone
24 chr5:180260000-180261800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
25 chr5:180260000-180261800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr5:180260000-180261800 Weak transcription Brain Angular Gyrus brain
27 chr5:180260000-180261800 Weak transcription NHLF lung
28 chr5:180260000-180262000 Weak transcription Pancreas Pancrea
29 chr5:180260000-180264000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr5:180260000-180268800 Weak transcription Brain Germinal Matrix brain
31 chr5:180260000-180271400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr5:180260000-180273200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr5:180260000-180273800 Weak transcription Fetal Kidney kidney
34 chr5:180260000-180274400 Weak transcription Muscle Satellite Cultured Cells --
35 chr5:180260000-180274400 Weak transcription NHDF-Ad bronchial
36 chr5:180260000-180276200 Weak transcription Stomach Mucosa stomach
37 chr5:180260200-180261600 Enhancers Primary T killer memory cells from peripheral blood blood
38 chr5:180260200-180261600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr5:180260200-180261600 Weak transcription Duodenum Smooth Muscle Duodenum
40 chr5:180260200-180261600 Weak transcription Stomach Smooth Muscle stomach
41 chr5:180260200-180261800 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr5:180260200-180262000 Weak transcription Psoas Muscle Psoas
43 chr5:180260200-180262000 Weak transcription Rectal Smooth Muscle rectum
44 chr5:180260200-180262200 Weak transcription Right Atrium heart
45 chr5:180260200-180263600 Weak transcription HepG2 liver
46 chr5:180260200-180264200 Weak transcription K562 blood
47 chr5:180260200-180267400 Weak transcription Fetal Heart heart
48 chr5:180260400-180261600 Weak transcription Colon Smooth Muscle Colon
49 chr5:180260400-180263000 Genic enhancers Fetal Adrenal Gland Adrenal Gland
50 chr5:180260600-180262000 Enhancers Primary T killer naive cells fromperipheralblood blood

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