Variant report

Variant	rs540609255
Chromosome Location	chr5:150952545-150952546
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20633	chr5:150941705-150955343	Strong transcription Enhancers Genic enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv600038	chr5:150950853-150955127	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv1811399	chr5:150952122-150954941	Weak transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:150948400-150953600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr5:150948400-150953600	Enhancers	Fetal Thymus	thymus
3	chr5:150948600-150952600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:150951200-150953600	Weak transcription	Esophagus	oesophagus
5	chr5:150951200-150960400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr5:150951400-150953400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:150951400-150959600	Weak transcription	Placenta	Placenta
8	chr5:150951600-150955800	Weak transcription	Primary B cells from cord blood	blood
9	chr5:150951600-150956400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr5:150951600-150960400	Genic enhancers	NHEK	skin
11	chr5:150952000-150955800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:150952400-150953600	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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