Variant report

Variant	rs541004623
Chromosome Location	chr6:29457292-29457293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:29457282-29457332	GM19239	blood:	n/a
2	chr6:29457282-29457332	PFSK-1	brain:	n/a
3	chr6:29457282-29457332	SK-N-SH	brain:	n/a
4	chr6:29457282-29457332	A549	lung:	n/a
5	chr6:29457282-29457332	U87	brain:	n/a
6	chr6:29457282-29457332	Hepatocyte	liver:	n/a
7	chr6:29457282-29457332	HCPEpiC	choroid plexus:	n/a
8	chr6:29457282-29457332	AG04450	lung:	fetal
9	chr6:29457282-29457332	HEEpiC	esophagus:	n/a
10	chr6:29457282-29457332	AG09309	skin:	n/a
11	chr6:29457282-29457332	CMK	blood:	n/a
12	chr6:29457282-29457332	ovcar-3	ovarian:	n/a
13	chr6:29457282-29457332	LNCaP	prostate:	n/a
14	chr6:29457282-29457332	HRCEpiC	kidney:	n/a
15	chr6:29457282-29457332	MCF10A-Er-Src	breast:	n/a
16	chr6:29457282-29457332	AG09319	gingival:	n/a
17	chr6:29457282-29457332	PrEC	prostate:	n/a
18	chr6:29457282-29457332	SAEC	small airway:	n/a
19	chr6:29457282-29457332	T-47D	breast:	n/a
20	chr6:29457282-29457332	HUVEC	blood vessel:	n/a
21	chr6:29457282-29457332	HPAEpiC	pulmonary alveolar:	n/a
22	chr6:29457282-29457332	HAEpiC	amniotic membrane:	n/a
23	chr6:29457282-29457332	NHBE	bronchial:	n/a
24	chr6:29457282-29457332	GM12878	blood:	n/a
25	chr6:29457282-29457332	SK-N-MC	brain:	n/a
26	chr6:29457282-29457332	Caco-2	colon:	n/a
27	chr6:29457282-29457332	GM12891	blood:	n/a
28	chr6:29457282-29457332	HCF	heart:	n/a
29	chr6:29457282-29457332	HRPEpiC	eye:	n/a
30	chr6:29457282-29457332	MCF-7	breast:	n/a
31	chr6:29457282-29457332	HIPEpiC	eye:	n/a
32	chr6:29457282-29457332	NHDF-neo	bronchial:	n/a
33	chr6:29457282-29457332	HepG2	liver:	n/a
34	chr6:29457282-29457332	NB4	blood:	n/a
35	chr6:29457282-29457332	HCT-116	colon:	n/a
36	chr6:29457282-29457332	NH-A	brain:	n/a
37	chr6:29457282-29457332	ProgFib	skin:	n/a
38	chr6:29457282-29457332	H1-hESC	embryonic stem cell:	embryo
39	chr6:29457282-29457332	BJ	skin:	n/a
40	chr6:29457282-29457332	ECC-1	luminal epithelium:	n/a
41	chr6:29457282-29457332	HMEC	breast:	n/a
42	chr6:29457282-29457332	HL-60	blood:	n/a
43	chr6:29457282-29457332	RPTEC	kidney:	n/a
44	chr6:29457282-29457332	Jurkat	blood:	n/a
45	chr6:29457282-29457332	K562	blood:	n/a
46	chr6:29457282-29457332	HRE	kidney:	n/a
47	chr6:29457282-29457332	SKMC	muscle:	n/a
48	chr6:29457282-29457332	GM06990	blood:	n/a
49	chr6:29457282-29457332	AG10803	skin:	n/a
50	chr6:29457282-29457332	Hela-S3	cervix:	n/a

No data

Variant related genes	Relation type
MAS1L	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424039	chr6:29439297-29504564	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv883528	chr6:29447724-29494897	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv981125	chr6:29456623-29457966	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29454800-29457800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:29456000-29457800	Weak transcription	K562	blood
3	chr6:29457000-29457400	Enhancers	Liver	Liver
4	chr6:29457200-29458000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:29457200-29459400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr6:29457200-29461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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