Variant report

Variant	rs541518242
Chromosome Location	chr3:84919452-84919453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:84919438-84919488	CMK	blood:	n/a
2	chr3:84919438-84919488	AG10803	skin:	n/a
3	chr3:84919438-84919488	BJ	skin:	n/a
4	chr3:84919438-84919488	NH-A	brain:	n/a
5	chr3:84919438-84919488	GM19239	blood:	n/a
6	chr3:84919438-84919488	PANC-1	pancreas:	n/a
7	chr3:84919438-84919488	NHBE	bronchial:	n/a
8	chr3:84919438-84919488	NT2-D1	testis:	n/a
9	chr3:84919438-84919488	HRCEpiC	kidney:	n/a
10	chr3:84919438-84919488	Hela-S3	cervix:	n/a
11	chr3:84919438-84919488	HNPCEpiC	eye:	n/a
12	chr3:84919438-84919488	H1-hESC	embryonic stem cell:	embryo
13	chr3:84919438-84919488	A549	lung:	n/a
14	chr3:84919438-84919488	SAEC	small airway:	n/a
15	chr3:84919438-84919488	IMR90	lung:	fetal
16	chr3:84919438-84919488	NHDF-neo	bronchial:	n/a
17	chr3:84919438-84919488	GM12891	blood:	n/a
18	chr3:84919438-84919488	SK-N-SH	brain:	n/a
19	chr3:84919438-84919488	GM12892	blood:	n/a
20	chr3:84919438-84919488	LNCaP	prostate:	n/a
21	chr3:84919438-84919488	U87	brain:	n/a
22	chr3:84919438-84919488	AG09309	skin:	n/a
23	chr3:84919438-84919488	HCF	heart:	n/a
24	chr3:84919438-84919488	Hepatocyte	liver:	n/a
25	chr3:84919438-84919488	PrEC	prostate:	n/a
26	chr3:84919438-84919488	HUVEC	blood vessel:	n/a
27	chr3:84919438-84919488	HEK293	kidney:	embryo
28	chr3:84919438-84919488	HRPEpiC	eye:	n/a
29	chr3:84919438-84919488	HCPEpiC	choroid plexus:	n/a
30	chr3:84919438-84919488	ECC-1	luminal epithelium:	n/a
31	chr3:84919438-84919488	HAEpiC	amniotic membrane:	n/a
32	chr3:84919438-84919488	NB4	blood:	n/a
33	chr3:84919438-84919488	T-47D	breast:	n/a
34	chr3:84919438-84919488	HepG2	liver:	n/a
35	chr3:84919438-84919488	ProgFib	skin:	n/a
36	chr3:84919438-84919488	MCF-7	breast:	n/a
37	chr3:84919438-84919488	AoSMC	blood vessel:	n/a
38	chr3:84919438-84919488	HL-60	blood:	n/a
39	chr3:84919438-84919488	HEEpiC	esophagus:	n/a
40	chr3:84919438-84919488	AG04449	skin:	fetal
41	chr3:84919438-84919488	GM12878	blood:	n/a
42	chr3:84919438-84919488	HCM	heart:	n/a
43	chr3:84919438-84919488	AG04450	lung:	fetal
44	chr3:84919438-84919488	Jurkat	blood:	n/a
45	chr3:84919438-84919488	HPAEpiC	pulmonary alveolar:	n/a
46	chr3:84919438-84919488	MCF10A-Er-Src	breast:	n/a
47	chr3:84919438-84919488	HCT-116	colon:	n/a
48	chr3:84919438-84919488	HIPEpiC	eye:	n/a
49	chr3:84919438-84919488	ovcar-3	ovarian:	n/a
50	chr3:84919438-84919488	HRE	kidney:	n/a

No data

Variant related genes	Relation type
LINC00971	CpG island

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381298	chr3:84689266-85030314	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001316	chr3:84773522-85071342	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv590895	chr3:84838638-84940927	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv877089	chr3:84870886-84940927	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877090	chr3:84876250-84951716	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877091	chr3:84876250-85069287	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv482371	chr3:84880813-85031486	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv471620	chr3:84880814-85031486	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv877092	chr3:84889597-84959077	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1014694	chr3:84917449-84959329	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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