Variant report

Variant	rs541546716
Chromosome Location	chr11:8829584-8829585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8708349..8711473-chr11:8829326..8831114,3	K562	blood:
2	chr11:8706888..8711251-chr11:8829326..8831400,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TRIM66-7	chr11:8829373-8832882	NONHSAT017885

Variant related genes	Relation type
ENSG00000166441	Chromatin interaction
ENSG00000212607	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527073	chr11:8829168-8848463	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8809000-8830200	Weak transcription	Fetal Brain Male	brain
2	chr11:8811800-8830400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:8811800-8830600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:8816400-8831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:8816600-8830000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:8816600-8830600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:8819800-8829800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:8821600-8830200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:8824200-8830400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr11:8825400-8830400	Enhancers	Left Ventricle	heart
11	chr11:8825600-8829600	Enhancers	Gastric	stomach
12	chr11:8826400-8829800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:8826400-8830600	Enhancers	Brain Angular Gyrus	brain
14	chr11:8826600-8830200	Enhancers	Pancreas	Pancrea
15	chr11:8827400-8830400	Enhancers	Psoas Muscle	Psoas
16	chr11:8827400-8831200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:8827600-8830600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:8827600-8831000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr11:8827800-8829800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:8827800-8830200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:8827800-8830800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr11:8828000-8830000	Enhancers	Esophagus	oesophagus
23	chr11:8828000-8830800	Enhancers	Brain Germinal Matrix	brain
24	chr11:8828200-8829600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:8828200-8829600	Flanking Active TSS	Rectal Smooth Muscle	rectum
26	chr11:8828200-8830200	Flanking Active TSS	Colon Smooth Muscle	Colon
27	chr11:8828200-8830200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:8828200-8830400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr11:8828200-8831000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr11:8828400-8829800	Flanking Active TSS	Colonic Mucosa	Colon
31	chr11:8828400-8830000	Enhancers	Lung	lung
32	chr11:8828400-8830400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr11:8828400-8831000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:8828600-8829600	Flanking Active TSS	Fetal Muscle Trunk	muscle
35	chr11:8828600-8830000	Enhancers	Fetal Intestine Large	intestine
36	chr11:8828600-8830000	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr11:8828600-8830600	Enhancers	Fetal Intestine Small	intestine
38	chr11:8828600-8830800	Transcr. at gene 5' and 3'	Fetal Stomach	stomach
39	chr11:8828600-8830800	Flanking Active TSS	Stomach Mucosa	stomach
40	chr11:8828600-8830800	Flanking Active TSS	HMEC	breast
41	chr11:8828600-8831000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr11:8828600-8831200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:8828600-8831200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:8828600-8831200	Flanking Active TSS	HSMMtube	muscle
45	chr11:8828600-8831200	Flanking Active TSS	NHEK	skin
46	chr11:8828600-8831400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr11:8828600-8831400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr11:8828800-8829600	Enhancers	H1 Cell Line	embryonic stem cell
49	chr11:8828800-8830200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr11:8828800-8830200	Enhancers	Spleen	Spleen

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