Variant report

Variant	rs541573828
Chromosome Location	chr8:89013451-89013452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv428520	chr8:88933423-89089323	Strong transcription Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv2758163	chr8:88963829-89133704	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv2759625	chr8:88963829-89133704	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv2762758	chr8:89013301-89033922	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89012200-89014800	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:89012800-89013600	Active TSS	Brain Anterior Caudate	brain
3	chr8:89012800-89013600	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr8:89012800-89013600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
5	chr8:89012800-89013600	Enhancers	NH-A	brain
6	chr8:89012800-89013800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:89012800-89013800	Flanking Active TSS	HUVEC	blood vessel
8	chr8:89012800-89014800	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:89013000-89013600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:89013000-89013600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:89013000-89013600	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr8:89013000-89013800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:89013000-89014000	Enhancers	Fetal Kidney	kidney
14	chr8:89013200-89013600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:89013200-89013600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:89013200-89013600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:89013200-89013600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:89013200-89013600	Enhancers	Adipose Nuclei	Adipose
19	chr8:89013200-89014000	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr8:89013400-89013600	Enhancers	Brain Angular Gyrus	brain
21	chr8:89013400-89013600	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr8:89013400-89013600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr8:89013400-89013600	Active TSS	Osteobl	bone
24	chr8:89013400-89014200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:89013400-89014800	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr8:89013400-89014800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr8:89013400-89017200	Weak transcription	Aorta	Aorta

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