Variant report

Variant	rs541591263
Chromosome Location	chr15:77711203-77711204
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:77711181-77711336	HepG2	liver:	n/a	n/a
2	RFX5	chr15:77711201-77712051	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr15:77710728-77713515	IMR90	lung:	n/a	n/a
4	SMC3	chr15:77711175-77714043	Hela-S3	cervix:	n/a	chr15:77711935-77711945
5	MAZ	chr15:77710652-77714451	IMR90	lung:	n/a	chr15:77711944-77711954 chr15:77712740-77712750
6	RAD21	chr15:77710639-77712623	IMR90	lung:	n/a	chr15:77711533-77711547
7	POLR2A	chr15:77710478-77711474	HUVEC	blood vessel:	n/a	n/a
8	MTA3	chr15:77710883-77712065	GM12878	blood:	n/a	n/a
9	MXI1	chr15:77710812-77714549	SK-N-SH	brain:	n/a	n/a
10	ZNF263	chr15:77711155-77711948	HEK293-T-REx	kidney:	n/a	chr15:77711547-77711556 chr15:77711536-77711557
11	HCFC1	chr15:77710661-77714679	Hela-S3	cervix:	n/a	n/a
12	GATA3	chr15:77709823-77711753	SK-N-SH	brain:	n/a	chr15:77710536-77710545 chr15:77710536-77710543 chr15:77710536-77710543 chr15:77710536-77710543
13	MXI1	chr15:77710378-77714696	IMR90	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:77709022..77711510-chr15:77717279..77719349,2	K562	blood:
2	chr15:77695120..77697268-chr15:77709701..77711591,2	K562	blood:
3	chr15:77701664..77703699-chr15:77708996..77711356,2	MCF-7	breast:
4	chr15:77688577..77690434-chr15:77709040..77711857,2	K562	blood:

Variant related genes	Relation type
HMG20A	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv482689	chr15:77576396-77731559	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv21291	chr15:77707945-77712363	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3422226	chr15:77710922-77713870	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a
8	esv3327387	chr15:77711172-77713620	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77703000-77711400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr15:77708200-77711400	Weak transcription	Gastric	stomach
3	chr15:77708200-77711400	Weak transcription	Pancreas	Pancrea
4	chr15:77708200-77711400	Weak transcription	Spleen	Spleen
5	chr15:77709400-77711400	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr15:77709400-77711600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:77709600-77712600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:77709600-77713800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:77709800-77711400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr15:77710000-77711400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr15:77710000-77711400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:77710200-77711400	Weak transcription	Small Intestine	intestine
13	chr15:77710200-77711600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:77710200-77713600	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr15:77710200-77714400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:77710200-77714400	Active TSS	Right Atrium	heart
17	chr15:77710400-77711600	Flanking Active TSS	Brain Anterior Caudate	brain
18	chr15:77710400-77713800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:77710400-77714400	Active TSS	Right Ventricle	heart
20	chr15:77710400-77714400	Active TSS	NHDF-Ad	bronchial
21	chr15:77710400-77714600	Active TSS	NHLF	lung
22	chr15:77710600-77711400	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr15:77710600-77711600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:77710600-77711600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:77710600-77711800	Flanking Active TSS	Dnd41	blood
26	chr15:77710600-77713600	Active TSS	HSMMtube	muscle
27	chr15:77710600-77713800	Active TSS	Colon Smooth Muscle	Colon
28	chr15:77710600-77713800	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr15:77710600-77714200	Active TSS	H1 Cell Line	embryonic stem cell
30	chr15:77710600-77714200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:77710600-77714600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:77710800-77711400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
33	chr15:77710800-77711400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
34	chr15:77710800-77711400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr15:77710800-77711400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:77710800-77711400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr15:77710800-77711400	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
38	chr15:77710800-77711400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:77710800-77711400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:77710800-77711400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr15:77710800-77711400	Flanking Active TSS	A549	lung
42	chr15:77710800-77711400	Flanking Active TSS	HSMM	muscle
43	chr15:77710800-77711600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
44	chr15:77710800-77711600	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr15:77710800-77711600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
46	chr15:77710800-77711600	Flanking Active TSS	Hela-S3	cervix
47	chr15:77710800-77711600	Flanking Active TSS	HMEC	breast
48	chr15:77710800-77711600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr15:77710800-77711800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr15:77710800-77711800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links