Variant report

Variant	rs541774
Chromosome Location	chr11:104713689-104713690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs481322	1.00[ASN][1000 genomes]
rs482385	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs499423	1.00[ASN][1000 genomes]
rs5000899	0.87[AMR][1000 genomes]
rs501149	1.00[ASN][1000 genomes]
rs509965	1.00[ASN][1000 genomes]
rs517153	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs519907	1.00[ASN][1000 genomes]
rs520458	1.00[CHB][hapmap]
rs521270	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs521752	1.00[ASN][1000 genomes]
rs530398	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs531129	1.00[ASN][1000 genomes]
rs531439	1.00[ASN][1000 genomes]
rs535297	1.00[ASN][1000 genomes]
rs550051	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs552761	1.00[ASN][1000 genomes]
rs556062	1.00[ASN][1000 genomes]
rs569468	1.00[ASN][1000 genomes]
rs619515	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs626354	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs657708	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv826072	chr11:104662708-104768357	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv33953	chr11:104709950-104737532	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104710200-104714000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:104711400-104714400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:104711800-104715000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:104713000-104714600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr11:104713200-104714000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:104713200-104716800	Weak transcription	Brain Substantia Nigra	brain

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