Variant report

Variant	rs626354
Chromosome Location	chr11:104746559-104746560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12276274	1.00[EUR][1000 genomes]
rs12286054	1.00[EUR][1000 genomes]
rs17103106	1.00[EUR][1000 genomes]
rs17103307	1.00[EUR][1000 genomes]
rs17103313	1.00[EUR][1000 genomes]
rs2114368	1.00[EUR][1000 genomes]
rs2114369	1.00[EUR][1000 genomes]
rs2114370	1.00[EUR][1000 genomes]
rs2162342	1.00[EUR][1000 genomes]
rs34464472	1.00[EUR][1000 genomes]
rs3888096	1.00[EUR][1000 genomes]
rs4258348	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4540818	1.00[EUR][1000 genomes]
rs477993	1.00[EUR][1000 genomes]
rs481322	1.00[ASN][1000 genomes]
rs482385	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs484438	1.00[EUR][1000 genomes]
rs499423	1.00[ASN][1000 genomes]
rs5000899	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs501149	1.00[ASN][1000 genomes]
rs508916	1.00[EUR][1000 genomes]
rs509965	1.00[ASN][1000 genomes]
rs517153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519907	1.00[ASN][1000 genomes]
rs520458	1.00[CHB][hapmap]
rs520766	1.00[EUR][1000 genomes]
rs521107	1.00[EUR][1000 genomes]
rs521270	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs521752	1.00[ASN][1000 genomes]
rs525020	1.00[EUR][1000 genomes]
rs527522	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs530398	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs531129	1.00[ASN][1000 genomes]
rs531439	1.00[ASN][1000 genomes]
rs532089	1.00[EUR][1000 genomes]
rs535297	1.00[ASN][1000 genomes]
rs541774	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs550051	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552761	1.00[ASN][1000 genomes]
rs556062	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs556589	1.00[EUR][1000 genomes]
rs557069	1.00[EUR][1000 genomes]
rs566945	1.00[EUR][1000 genomes]
rs569468	1.00[ASN][1000 genomes]
rs579353	1.00[EUR][1000 genomes]
rs59301970	1.00[EUR][1000 genomes]
rs606399	1.00[EUR][1000 genomes]
rs608655	1.00[EUR][1000 genomes]
rs619515	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640857	1.00[EUR][1000 genomes]
rs652377	1.00[EUR][1000 genomes]
rs655884	1.00[EUR][1000 genomes]
rs657708	1.00[ASN][1000 genomes]
rs693506	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv826072	chr11:104662708-104768357	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	esv2757474	chr11:104719593-104798545	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2759862	chr11:104719593-104798545	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv8869	chr11:104724605-104760037	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv3465886	chr11:104724810-104759731	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv3465897	chr11:104724823-104759731	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3465908	chr11:104724823-104759731	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3693098	chr11:104728524-104759546	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104742000-104746600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:104744200-104761000	Weak transcription	Aorta	Aorta
3	chr11:104745400-104749200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:104745600-104768600	Weak transcription	Left Ventricle	heart
5	chr11:104746000-104746800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:104746000-104747000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr11:104746000-104747000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr11:104746000-104747000	Enhancers	Dnd41	blood
9	chr11:104746000-104747600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr11:104746000-104749000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:104746200-104747000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr11:104746200-104747600	Enhancers	Primary T cells from cord blood	blood
13	chr11:104746200-104747600	Enhancers	Primary T cells fromperipheralblood	blood
14	chr11:104746400-104747000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr11:104746400-104747800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr11:104746400-104748600	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr11:104746400-104749200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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