Variant report

Variant	rs541796039
Chromosome Location	chr10:116163981-116163982
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116149327..116151183-chr10:116162004..116164097,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3340687	chr10:116162987-116165535	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116161800-116165000	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr10:116162000-116164800	Active TSS	Aorta	Aorta
3	chr10:116162200-116165200	Active TSS	Rectal Smooth Muscle	rectum
4	chr10:116162400-116164200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr10:116162400-116164200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
6	chr10:116162400-116165000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr10:116162400-116165200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
9	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
10	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
11	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
12	chr10:116162600-116164400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
13	chr10:116162600-116164600	Active TSS	H9 Cell Line	embryonic stem cell
14	chr10:116162600-116164800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:116162600-116164800	Active TSS	Colon Smooth Muscle	Colon
16	chr10:116162600-116164800	Active TSS	Fetal Kidney	kidney
17	chr10:116162600-116165000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
18	chr10:116162600-116165400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
19	chr10:116162600-116165600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr10:116162800-116164000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
21	chr10:116162800-116164200	Flanking Active TSS	Pancreas	Pancrea
22	chr10:116162800-116164400	Bivalent/Poised TSS	Psoas Muscle	Psoas
23	chr10:116162800-116164600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:116162800-116164600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:116162800-116164600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr10:116162800-116164600	Active TSS	Left Ventricle	heart
27	chr10:116162800-116164600	Active TSS	HMEC	breast
28	chr10:116162800-116164800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
29	chr10:116162800-116164800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:116162800-116164800	Active TSS	Ovary	ovary
31	chr10:116162800-116164800	Active TSS	Right Atrium	heart
32	chr10:116162800-116164800	Active TSS	NHEK	skin
33	chr10:116162800-116165000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:116162800-116165000	Active TSS	Esophagus	oesophagus
35	chr10:116162800-116165200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr10:116162800-116165200	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
37	chr10:116163000-116164000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:116163000-116164200	Flanking Active TSS	NH-A	brain
39	chr10:116163000-116164400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:116163000-116164600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
41	chr10:116163000-116164800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
42	chr10:116163000-116164800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
43	chr10:116163000-116164800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:116163000-116164800	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr10:116163000-116165000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr10:116163000-116165000	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr10:116163000-116165000	Bivalent/Poised TSS	Thymus	Thymus
48	chr10:116163200-116164000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:116163200-116164000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
50	chr10:116163200-116164200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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