Variant report

Variant	esv3340687
Chromosome Location	chr10:116162987-116165535
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr10:116164049-116164204	H1-hESC	embryonic stem cell:	n/a	n/a
2	CHD1	chr10:116164515-116164693	H1-hESC	embryonic stem cell:	n/a	n/a
3	CHD2	chr10:116164666-116164724	H1-hESC	embryonic stem cell:	n/a	n/a
4	CREB1	chr10:116163327-116163722	A549	lung:	n/a	n/a
5	CREB1	chr10:116164131-116164777	A549	lung:	n/a	n/a
6	CTBP2	chr10:116162559-116165050	H1-hESC	embryonic stem cell:	n/a	n/a
7	CTCF	chr10:116163520-116163670	WERI-Rb-1	eye:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
8	CTCF	chr10:116163500-116163650	A549	lung:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
9	CTCF	chr10:116163940-116164090	HMEC	breast:	n/a	n/a
10	CTCF	chr10:116163540-116163690	AG04449	skin:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
11	CTCF	chr10:116163480-116163630	HRPEpiC	eye:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
12	CTCF	chr10:116163160-116163310	GM12870	blood:	n/a	n/a
13	CTCF	chr10:116163524-116163654	GM13976	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
14	CTCF	chr10:116163450-116163677	A549	lung:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
15	CTCF	chr10:116163400-116163550	HAc	cerebellar:	n/a	n/a
16	CTCF	chr10:116163520-116163670	BE2_C	brain:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
17	CTCF	chr10:116163534-116163686	Pancreas_OC	pancreas:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
18	CTCF	chr10:116163440-116163590	HFF	foreskin:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
19	CTCF	chr10:116164194-116164239	LNCaP	prostate:	n/a	n/a
20	CTCF	chr10:116163520-116163670	HRE	kidney:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
21	CTCF	chr10:116163520-116163670	GM12864	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
22	CTCF	chr10:116163527-116163657	ProgFib	skin:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
23	CTCF	chr10:116163440-116163590	HCM	heart:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
24	CTCF	chr10:116163514-116163680	GM10248	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
25	CTCF	chr10:116163480-116163630	HVMF	connective:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
26	CTCF	chr10:116163460-116163610	NHDF-neo	bronchial:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
27	CTCF	chr10:116163563-116163615	GM19239	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
28	CTCF	chr10:116163501-116163698	GM12892	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
29	CTCF	chr10:116163482-116163690	H1-hESC	embryonic stem cell:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
30	CTCF	chr10:116163540-116163690	GM12865	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
31	CTCF	chr10:116163540-116163690	GM12875	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
32	CTCF	chr10:116163501-116163667	GM19240	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
33	CTCF	chr10:116163820-116163970	HMEC	breast:	n/a	n/a
34	CTCF	chr10:116163540-116163690	HRPEpiC	eye:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
35	CTCF	chr10:116163699-116163701	GM12892	blood:	n/a	n/a
36	CTCF	chr10:116163440-116163590	BJ	skin:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
37	CTCF	chr10:116163460-116163610	NHEK	skin:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
38	CTCF	chr10:116163568-116163616	Gliobla	brain:	n/a	chr10:116163569-116163582
39	CTCF	chr10:116163520-116163670	HMEC	breast:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
40	CTCF	chr10:116163560-116163710	GM12878	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
41	CTCF	chr10:116164118-116164264	NHEK	skin:	n/a	n/a
42	CTCF	chr10:116163500-116163650	GM12866	blood:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
43	CTCF	chr10:116163501-116163661	T-47D	breast:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
44	CTCF	chr10:116163460-116163610	HVMF	connective:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
45	CTCF	chr10:116163500-116163650	HMF	breast:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
46	CTCF	chr10:116163480-116163630	HFF-Myc	foreskin:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
47	CTCF	chr10:116163780-116163930	A549	lung:	n/a	n/a
48	CTCF	chr10:116163740-116163890	RPTEC	kidney:	n/a	n/a
49	CTCF	chr10:116162847-116163887	A549	lung:	n/a	chr10:116163567-116163585 chr10:116163569-116163582
50	CTCF	chr10:116163391-116163657	H1-hESC	embryonic stem cell:	n/a	chr10:116163567-116163585 chr10:116163569-116163582

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:116164714-116164764	Hela-S3	cervix:	n/a
2	chr10:116164714-116164764	Hela-S3	cervix:	n/a
3	chr10:116164849-116164899	LNCaP	prostate:	n/a
4	chr10:116164955-116165005	HCT-116	colon:	n/a
5	chr10:116163392-116163442	NH-A	brain:	n/a
6	chr10:116164122-116164172	NB4	blood:	n/a
7	chr10:116164350-116164400	RPTEC	kidney:	n/a
8	chr10:116164849-116164899	SK-N-SH	brain:	n/a
9	chr10:116164350-116164400	U87	brain:	n/a
10	chr10:116164714-116164764	ovcar-3	ovarian:	n/a
11	chr10:116164350-116164400	GM19239	blood:	n/a
12	chr10:116164350-116164400	BJ	skin:	n/a
13	chr10:116164640-116164690	NB4	blood:	n/a
14	chr10:116163392-116163442	SKMC	muscle:	n/a
15	chr10:116164849-116164899	GM12878	blood:	n/a
16	chr10:116164598-116164648	HRE	kidney:	n/a
17	chr10:116164598-116164648	IMR90	lung:	fetal
18	chr10:116164640-116164690	HRCEpiC	kidney:	n/a
19	chr10:116164714-116164764	K562	blood:	n/a
20	chr10:116164712-116164762	HL-60	blood:	n/a
21	chr10:116165190-116165240	HPAEpiC	pulmonary alveolar:	n/a
22	chr10:116163392-116163442	HL-60	blood:	n/a
23	chr10:116163392-116163442	HCT-116	colon:	n/a
24	chr10:116164122-116164172	HRE	kidney:	n/a
25	chr10:116164712-116164762	AG04450	lung:	fetal
26	chr10:116164350-116164400	Jurkat	blood:	n/a
27	chr10:116163392-116163442	RPTEC	kidney:	n/a
28	chr10:116164122-116164172	SK-N-SH_RA	brain:	n/a
29	chr10:116164712-116164762	HRE	kidney:	n/a
30	chr10:116164714-116164764	CMK	blood:	n/a
31	chr10:116163160-116163210	PANC-1	pancreas:	n/a
32	chr10:116164122-116164172	BE2_C	brain:	n/a
33	chr10:116164712-116164762	AG04449	skin:	fetal
34	chr10:116163160-116163210	ovcar-3	ovarian:	n/a
35	chr10:116163392-116163442	HIPEpiC	eye:	n/a
36	chr10:116163160-116163210	NT2-D1	testis:	n/a
37	chr10:116164712-116164762	BE2_C	brain:	n/a
38	chr10:116165190-116165240	RPTEC	kidney:	n/a
39	chr10:116164955-116165005	K562	blood:	n/a
40	chr10:116164955-116165005	A549	lung:	n/a
41	chr10:116165190-116165240	SK-N-SH_RA	brain:	n/a
42	chr10:116164955-116165005	BE2_C	brain:	n/a
43	chr10:116164350-116164400	AG10803	skin:	n/a
44	chr10:116163392-116163442	HEK293	kidney:	embryo
45	chr10:116164714-116164764	GM19239	blood:	n/a
46	chr10:116164714-116164764	SK-N-MC	brain:	n/a
47	chr10:116164955-116165005	HRPEpiC	eye:	n/a
48	chr10:116164598-116164648	GM19239	blood:	n/a
49	chr10:116164598-116164648	NB4	blood:	n/a
50	chr10:116164598-116164648	HUVEC	blood vessel:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116149327..116151183-chr10:116162004..116164097,2	MCF-7	breast:

Variant related genes	Relation type
AFAP1L2	TF binding region
AFAP1L2	CpG island

Extended variants
information (count: 91 )
Associated
traits (count: 66 )

Variant overlapped rSNPs/rCNVs (count:91 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201302452	chr10:116163007-116163008	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs78872292	chr10:116163022-116163023	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs557271339	chr10:116163026-116163027	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs575430354	chr10:116163093-116163094	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs545651400	chr10:116163159-116163160	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs565381274	chr10:116163205-116163206	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs75920616	chr10:116163244-116163245	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs117737337	chr10:116163265-116163266	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs180754495	chr10:116163287-116163288	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs530012366	chr10:116163330-116163331	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs72826943	chr10:116163332-116163333	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs563792285	chr10:116163334-116163335	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs148943268	chr10:116163344-116163345	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs143661901	chr10:116163396-116163397	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs570539433	chr10:116163399-116163400	Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs534750975	chr10:116163413-116163414	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
17	rs546715926	chr10:116163447-116163448	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
18	rs11196727	chr10:116163479-116163480	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs373158064	chr10:116163504-116163505	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
20	rs189795570	chr10:116163520-116163521	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
21	rs557244031	chr10:116163563-116163564	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
22	rs376415347	chr10:116163624-116163625	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
23	rs575401457	chr10:116163638-116163639	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
24	rs377292144	chr10:116163702-116163703	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
25	rs539628702	chr10:116163735-116163736	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
26	rs557707015	chr10:116163737-116163738	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs572696918	chr10:116163758-116163759	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs61868314	chr10:116163791-116163792	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs553031355	chr10:116163799-116163800	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs181374205	chr10:116163861-116163862	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
31	rs369469143	chr10:116163963-116163964	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
32	rs541796039	chr10:116163981-116163982	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
33	rs376982401	chr10:116164050-116164051	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
34	rs186090403	chr10:116164083-116164084	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
35	rs555546530	chr10:116164094-116164095	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
36	rs531073502	chr10:116164117-116164118	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
37	rs546469388	chr10:116164123-116164124	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
38	rs564573022	chr10:116164125-116164126	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
39	rs370666426	chr10:116164137-116164138	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
40	rs190804456	chr10:116164160-116164161	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
41	rs568127821	chr10:116164191-116164192	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
42	rs373877915	chr10:116164215-116164216	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
43	rs528900039	chr10:116164219-116164220	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
44	rs550265811	chr10:116164238-116164239	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	n/a	n/a	Overlapped CNVs	n/a
45	rs568824336	chr10:116164239-116164240	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
46	rs368535865	chr10:116164244-116164245	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
47	rs558008019	chr10:116164262-116164263	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
48	rs566361720	chr10:116164267-116164268	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
49	rs533701801	chr10:116164294-116164295	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a
50	rs57922449	chr10:116164296-116164297	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:66)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Paraganglioma	17535989	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
Wilms tumour	21544195	CNVD
Prostate cancer	16573809	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	16608533	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	17002787	CNVD
Breast cancer	17393978	CNVD
Ovarian cancer	21720365	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Cornelia de Lange syndrome	24599119	CNVD
T-cell lymphomas	19863542	CNVD
Breast cancer	16397240	CNVD
Urothelial carcinoma	21177765	CNVD
Chronic lymphocytic leukemia	18645599	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Hepatocellular carcinoma	16750200	CNVD
Barrett''s syndrome	19417022	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Neuroticism	17667963	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Myxofibrosarcoma	16751306	CNVD
Breast cancer	17133270	CNVD

Chromatin state (count:359 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116159000-116163000	Enhancers	HSMMtube	muscle
2	chr10:116161800-116165000	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr10:116162000-116163000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:116162000-116163200	Flanking Active TSS	Stomach Smooth Muscle	stomach
5	chr10:116162000-116164800	Active TSS	Aorta	Aorta
6	chr10:116162200-116163400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:116162200-116165200	Active TSS	Rectal Smooth Muscle	rectum
8	chr10:116162400-116164200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:116162400-116164200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
10	chr10:116162400-116165000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
11	chr10:116162400-116165200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:116162600-116163000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:116162600-116163000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:116162600-116163000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:116162600-116163000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
16	chr10:116162600-116163000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
17	chr10:116162600-116163000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
18	chr10:116162600-116163000	Bivalent Enhancer	Fetal Brain Male	brain
19	chr10:116162600-116163000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
20	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
22	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr10:116162600-116163200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
24	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
25	chr10:116162600-116163200	Enhancers	Lung	lung
26	chr10:116162600-116163200	Enhancers	HSMM	muscle
27	chr10:116162600-116163400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:116162600-116163400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:116162600-116163400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
30	chr10:116162600-116163400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
31	chr10:116162600-116163400	Flanking Active TSS	Placenta	Placenta
32	chr10:116162600-116163400	Active TSS	Right Ventricle	heart
33	chr10:116162600-116163800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr10:116162600-116163800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
35	chr10:116162600-116163800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
36	chr10:116162600-116163800	Active TSS	Spleen	Spleen
37	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
38	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
39	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
40	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
41	chr10:116162600-116164400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
42	chr10:116162600-116164600	Active TSS	H9 Cell Line	embryonic stem cell
43	chr10:116162600-116164800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:116162600-116164800	Active TSS	Colon Smooth Muscle	Colon
45	chr10:116162600-116164800	Active TSS	Fetal Kidney	kidney
46	chr10:116162600-116165000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
47	chr10:116162600-116165400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
48	chr10:116162600-116165600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
49	chr10:116162800-116163000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr10:116162800-116163000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links