Variant report

Variant	rs78872292
Chromosome Location	chr10:116163022-116163023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116149327..116151183-chr10:116162004..116164097,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3340687	chr10:116162987-116165535	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116161800-116165000	Active TSS	Breast Myoepithelial Primary Cells	Breast
2	chr10:116162000-116163200	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr10:116162000-116164800	Active TSS	Aorta	Aorta
4	chr10:116162200-116163400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:116162200-116165200	Active TSS	Rectal Smooth Muscle	rectum
6	chr10:116162400-116164200	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:116162400-116164200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
8	chr10:116162400-116165000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
9	chr10:116162400-116165200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
12	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
13	chr10:116162600-116163200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
14	chr10:116162600-116163200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
15	chr10:116162600-116163200	Enhancers	Lung	lung
16	chr10:116162600-116163200	Enhancers	HSMM	muscle
17	chr10:116162600-116163400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr10:116162600-116163400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
19	chr10:116162600-116163400	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr10:116162600-116163400	Flanking Bivalent TSS/Enh	Fetal Lung	lung
21	chr10:116162600-116163400	Flanking Active TSS	Placenta	Placenta
22	chr10:116162600-116163400	Active TSS	Right Ventricle	heart
23	chr10:116162600-116163800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:116162600-116163800	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
25	chr10:116162600-116163800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
26	chr10:116162600-116163800	Active TSS	Spleen	Spleen
27	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
28	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
29	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr10:116162600-116164200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
31	chr10:116162600-116164400	Bivalent/Poised TSS	Brain Substantia Nigra	brain
32	chr10:116162600-116164600	Active TSS	H9 Cell Line	embryonic stem cell
33	chr10:116162600-116164800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:116162600-116164800	Active TSS	Colon Smooth Muscle	Colon
35	chr10:116162600-116164800	Active TSS	Fetal Kidney	kidney
36	chr10:116162600-116165000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
37	chr10:116162600-116165400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
38	chr10:116162600-116165600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
39	chr10:116162800-116163200	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr10:116162800-116163200	Bivalent Enhancer	Primary T cells from cord blood	blood
41	chr10:116162800-116163200	Bivalent/Poised TSS	Colonic Mucosa	Colon
42	chr10:116162800-116163200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
43	chr10:116162800-116163200	Bivalent/Poised TSS	Fetal Thymus	thymus
44	chr10:116162800-116163400	Active TSS	Placenta Amnion	Placenta Amnion
45	chr10:116162800-116163400	Flanking Bivalent TSS/Enh	NHLF	lung
46	chr10:116162800-116163600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
47	chr10:116162800-116163600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
48	chr10:116162800-116163800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
49	chr10:116162800-116163800	Bivalent Enhancer	Fetal Heart	heart
50	chr10:116162800-116164000	Bivalent/Poised TSS	Brain Angular Gyrus	brain

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