The 2.0 version of rSNPBase

Variant report

Variant rs541866634
Chromosome Location chr3:53168875-53168876
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:60 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:53164800-53170600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr3:53165000-53169800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr3:53165000-53176200 Weak transcription H9 Cell Line embryonic stem cell
4 chr3:53165000-53176400 Weak transcription Aorta Aorta
5 chr3:53165200-53169800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr3:53165400-53169000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr3:53165400-53173800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr3:53165400-53176000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr3:53165600-53169200 Weak transcription Brain Anterior Caudate brain
10 chr3:53165600-53169600 Weak transcription Fetal Muscle Leg muscle
11 chr3:53165600-53170800 Weak transcription Fetal Thymus thymus
12 chr3:53165600-53173400 Weak transcription Gastric stomach
13 chr3:53165600-53174200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
14 chr3:53165600-53174200 Weak transcription Fetal Heart heart
15 chr3:53165600-53174200 Weak transcription Left Ventricle heart
16 chr3:53165600-53174600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr3:53165600-53177800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr3:53165600-53181400 Weak transcription Spleen Spleen
19 chr3:53165800-53170600 Weak transcription GM12878-XiMat blood
20 chr3:53165800-53175400 Weak transcription Placenta Placenta
21 chr3:53166200-53174600 Weak transcription Primary B cells from cord blood blood
22 chr3:53166400-53170200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr3:53166400-53171200 Weak transcription Primary hematopoietic stem cells short term culture blood
24 chr3:53167200-53174400 Weak transcription HMEC breast
25 chr3:53167600-53169200 Enhancers Liver Liver
26 chr3:53167600-53170200 Enhancers Adipose Nuclei Adipose
27 chr3:53168200-53169200 Enhancers Skeletal Muscle Male skeletal muscle
28 chr3:53168200-53170000 Enhancers Skeletal Muscle Female skeletal muscle
29 chr3:53168400-53169200 Enhancers Brain Inferior Temporal Lobe brain
30 chr3:53168400-53169400 Enhancers Primary neutrophils fromperipheralblood blood
31 chr3:53168400-53169400 Enhancers Rectal Mucosa Donor 29 rectum
32 chr3:53168400-53169400 Enhancers Hela-S3 cervix
33 chr3:53168400-53169400 Enhancers Monocytes-CD14+_RO01746 blood
34 chr3:53168400-53170000 Enhancers Duodenum Mucosa Duodenum
35 chr3:53168400-53170000 Enhancers Stomach Mucosa stomach
36 chr3:53168400-53170200 Weak transcription HepG2 liver
37 chr3:53168400-53170800 Enhancers Breast Myoepithelial Primary Cells Breast
38 chr3:53168600-53169000 Enhancers Colonic Mucosa Colon
39 chr3:53168600-53169000 Bivalent Enhancer Fetal Muscle Trunk muscle
40 chr3:53168600-53169000 Enhancers Lung lung
41 chr3:53168600-53169000 Enhancers Right Atrium heart
42 chr3:53168600-53169200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
43 chr3:53168600-53169200 Enhancers Primary B cells from peripheral blood blood
44 chr3:53168600-53169200 Enhancers Primary T cells fromperipheralblood blood
45 chr3:53168600-53169200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
46 chr3:53168600-53169200 Enhancers Brain Hippocampus Middle brain
47 chr3:53168600-53169200 Enhancers Colon Smooth Muscle Colon
48 chr3:53168600-53169200 Enhancers Fetal Adrenal Gland Adrenal Gland
49 chr3:53168600-53169200 Enhancers Fetal Intestine Large intestine
50 chr3:53168600-53169200 Enhancers Fetal Lung lung

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Last update: Aug 31, 2015