Variant report

Variant	rs541877231
Chromosome Location	chr11:16212355-16212356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16206800-16212800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:16206800-16213000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:16206800-16215800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr11:16207200-16213000	Weak transcription	NHLF	lung
5	chr11:16207200-16215400	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16207200-16221200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:16207800-16213000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:16208000-16212800	Weak transcription	Fetal Heart	heart
9	chr11:16208000-16216400	Weak transcription	A549	lung
10	chr11:16208600-16213000	Weak transcription	Psoas Muscle	Psoas
11	chr11:16208600-16213000	Weak transcription	HepG2	liver
12	chr11:16208800-16213000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:16208800-16214800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr11:16210600-16216200	Weak transcription	Right Atrium	heart
15	chr11:16211800-16213200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:16212000-16217800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:16212200-16212800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:16212200-16213400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:16212200-16214400	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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