Variant report

Variant	rs542008239
Chromosome Location	chr15:45909490-45909491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45908544..45910284-chr15:45911212..45913714,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv3338975	chr15:45909185-45912033	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	esv3431461	chr15:45909285-45911908	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45896800-45912400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:45898400-45911000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:45898800-45911600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr15:45899600-45912400	Weak transcription	HSMMtube	muscle
5	chr15:45900800-45911800	Weak transcription	Primary B cells from cord blood	blood
6	chr15:45902200-45910200	Weak transcription	Fetal Brain Female	brain
7	chr15:45906200-45909800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:45908400-45909800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:45908600-45909600	Enhancers	Hela-S3	cervix
10	chr15:45908600-45909800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:45908600-45909800	Enhancers	NHEK	skin
12	chr15:45908800-45909600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:45908800-45909800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:45908800-45909800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr15:45908800-45909800	Enhancers	HMEC	breast
16	chr15:45909000-45909600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:45909000-45909600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:45909000-45909600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:45909000-45909600	Enhancers	Duodenum Mucosa	Duodenum
20	chr15:45909200-45909600	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr15:45909400-45909600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr15:45909400-45909600	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links