Variant report

Variant	rs542051616
Chromosome Location	chr19:19814914-19814915
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:19814581..19818356-chr19:19819384..19821651,3	K562	blood:
2	chr19:19814568..19817544-chr19:19975321..19978730,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256771	Chromatin interaction
ENSG00000270402	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828240	chr19:19591146-19900900	Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1063273	chr19:19591146-20061367	ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv3330851	chr19:19755507-19852881	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv519533	chr19:19789528-19831544	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1065704	chr19:19797999-19865818	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv543929	chr19:19797999-19865818	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1062017	chr19:19803482-19865818	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv543930	chr19:19803482-19865818	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1057601	chr19:19803482-19873623	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv1063535	chr19:19806386-19863631	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv1062212	chr19:19806386-19869332	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1060122	chr19:19814678-19879575	Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19791200-19816800	Weak transcription	Right Ventricle	heart
2	chr19:19808800-19818200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr19:19810800-19830800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr19:19811000-19816400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:19811600-19833200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:19812000-19818000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr19:19812200-19815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr19:19812200-19815600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr19:19812200-19815800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr19:19812400-19815800	Weak transcription	Dnd41	blood
11	chr19:19812600-19815800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr19:19813000-19815200	Strong transcription	Brain Inferior Temporal Lobe	brain
13	chr19:19813000-19816200	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr19:19813200-19815800	Weak transcription	Fetal Heart	heart
15	chr19:19813400-19833000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:19813600-19815200	Weak transcription	Psoas Muscle	Psoas
17	chr19:19813600-19815800	Strong transcription	Brain Hippocampus Middle	brain
18	chr19:19813800-19815600	Strong transcription	Stomach Smooth Muscle	stomach
19	chr19:19814000-19815000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
20	chr19:19814200-19816000	ZNF genes & repeats	Left Ventricle	heart
21	chr19:19814200-19833200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr19:19814400-19816200	ZNF genes & repeats	Ovary	ovary
23	chr19:19814400-19816400	ZNF genes & repeats	Fetal Lung	lung
24	chr19:19814400-19816400	ZNF genes & repeats	Placenta	Placenta
25	chr19:19814400-19821200	ZNF genes & repeats	Aorta	Aorta
26	chr19:19814400-19822000	ZNF genes & repeats	Fetal Stomach	stomach
27	chr19:19814600-19815000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr19:19814600-19815000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr19:19814600-19815000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr19:19814600-19815000	Strong transcription	Pancreas	Pancrea
31	chr19:19814600-19816000	ZNF genes & repeats	Fetal Intestine Large	intestine
32	chr19:19814600-19816000	ZNF genes & repeats	Lung	lung
33	chr19:19814600-19816000	ZNF genes & repeats	Thymus	Thymus
34	chr19:19814600-19816600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
35	chr19:19814600-19816600	ZNF genes & repeats	Gastric	stomach
36	chr19:19814600-19817200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
37	chr19:19814600-19818600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
38	chr19:19814600-19831400	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
39	chr19:19814600-19831400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr19:19814600-19833000	ZNF genes & repeats	Adipose Nuclei	Adipose
41	chr19:19814800-19815000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:19814800-19816000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
43	chr19:19814800-19818000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr19:19814800-19831400	ZNF genes & repeats	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links