Variant report

Variant	rs542229
Chromosome Location	chr11:121057458-121057459
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2847392	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499758	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs516678	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs570255	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs601155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs656402	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3452186	chr11:121053973-121057504	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	esv3393010	chr11:121054942-121057940	Enhancers Strong transcription Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	esv3400342	chr11:121054942-121057940	Weak transcription ZNF genes & repeats Enhancers Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121052800-121065600	Weak transcription	Gastric	stomach
2	chr11:121053400-121057600	Weak transcription	Aorta	Aorta
3	chr11:121053800-121065600	Weak transcription	Pancreas	Pancrea
4	chr11:121054400-121061800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:121055400-121065600	Weak transcription	Ovary	ovary
6	chr11:121055600-121065600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:121056000-121060400	Weak transcription	Brain Anterior Caudate	brain
8	chr11:121056200-121062000	Weak transcription	Fetal Brain Female	brain
9	chr11:121056800-121061800	Weak transcription	Fetal Heart	heart
10	chr11:121056800-121065400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:121056800-121065600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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