Variant report

Variant	rs516678
Chromosome Location	chr11:121038909-121038910
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2847392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs492018	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs499758	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs542229	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs570255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs601155	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs626945	1.00[MEX][hapmap]
rs634678	1.00[MEX][hapmap]
rs649404	1.00[MEX][hapmap]
rs651365	0.90[YRI][hapmap]
rs656402	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
2	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
4	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
5	chr11:121011400-121040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:121017000-121042400	Weak transcription	Brain Substantia Nigra	brain
7	chr11:121024400-121041200	Weak transcription	Fetal Brain Female	brain
8	chr11:121025400-121041200	Weak transcription	Psoas Muscle	Psoas
9	chr11:121025600-121041600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:121028800-121039600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:121029200-121040800	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:121033000-121040000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:121035600-121041600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:121037000-121039200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:121037400-121039000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr11:121037400-121039400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:121038800-121039000	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:121038800-121039600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:121038800-121039600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:121038800-121039600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:121038800-121039600	Strong transcription	Left Ventricle	heart
22	chr11:121038800-121039800	Enhancers	HUES6 Cell Line	embryonic stem cell

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