Variant report

Variant	rs651365
Chromosome Location	chr11:121007753-121007754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr11:121007670-121008062	GM12878	blood:	n/a	n/a
2	SUZ12	chr11:121007742-121008112	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr11:121007750-121007983	H1-hESC	embryonic stem cell:	n/a	n/a
4	NFATC1	chr11:121007626-121008172	GM12878	blood:	n/a	n/a
5	PBX3	chr11:121007712-121008046	GM12878	blood:	n/a	n/a
6	BCL3	chr11:121007643-121008110	GM12878	blood:	n/a	n/a
7	NFATC1	chr11:121007658-121008108	GM12878	blood:	n/a	n/a
8	BCL3	chr11:121007631-121008081	GM12878	blood:	n/a	n/a
9	TCF3	chr11:121007747-121008142	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
TECTA	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs516678	0.90[YRI][hapmap]
rs582193	1.00[AMR][1000 genomes]
rs601221	1.00[AMR][1000 genomes]
rs609502	0.83[AMR][1000 genomes]
rs61291716	1.00[AMR][1000 genomes]
rs626082	1.00[AMR][1000 genomes]
rs634678	0.83[AMR][1000 genomes]
rs656402	0.90[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3402556	chr11:121005842-121010040	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120993200-121008000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr11:120994000-121016200	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:120996800-121016400	Weak transcription	Ovary	ovary
5	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:120998400-121007800	Weak transcription	Fetal Brain Male	brain
7	chr11:120998800-121007800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120998800-121009400	Weak transcription	Spleen	Spleen
9	chr11:120999000-121007800	Weak transcription	Gastric	stomach
10	chr11:120999000-121011200	Weak transcription	Aorta	Aorta
11	chr11:120999200-121016200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:120999600-121007800	Weak transcription	Brain Germinal Matrix	brain
13	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
14	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:121001000-121008400	Weak transcription	Fetal Brain Female	brain
16	chr11:121001200-121007800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:121001200-121012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
19	chr11:121003200-121007800	Weak transcription	Pancreas	Pancrea
20	chr11:121005800-121023600	Weak transcription	Left Ventricle	heart
21	chr11:121006000-121024800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:121006400-121035400	Weak transcription	Brain Angular Gyrus	brain
23	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
24	chr11:121006600-121010000	Weak transcription	Fetal Heart	heart
25	chr11:121006600-121034800	Weak transcription	HSMMtube	muscle
26	chr11:121007000-121028800	Weak transcription	Fetal Muscle Leg	muscle
27	chr11:121007200-121011400	Strong transcription	Skeletal Muscle Male	skeletal muscle

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