Variant report

Variant	rs609502
Chromosome Location	chr11:121009605-121009606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs582193	0.83[AMR][1000 genomes]
rs601221	0.83[AMR][1000 genomes]
rs61291716	0.83[AMR][1000 genomes]
rs626082	0.83[AMR][1000 genomes]
rs626945	0.85[AMR][1000 genomes]
rs634678	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651365	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3402556	chr11:121005842-121010040	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120994000-121016200	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120994400-121042400	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:120996800-121016400	Weak transcription	Ovary	ovary
4	chr11:120996800-121037800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120999000-121011200	Weak transcription	Aorta	Aorta
6	chr11:120999200-121016200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:120999600-121041600	Weak transcription	Brain Anterior Caudate	brain
8	chr11:121000000-121025200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr11:121001200-121012000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr11:121001400-121028000	Weak transcription	Fetal Stomach	stomach
11	chr11:121005800-121023600	Weak transcription	Left Ventricle	heart
12	chr11:121006000-121024800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:121006400-121035400	Weak transcription	Brain Angular Gyrus	brain
14	chr11:121006400-121040200	Weak transcription	Right Ventricle	heart
15	chr11:121006600-121010000	Weak transcription	Fetal Heart	heart
16	chr11:121006600-121034800	Weak transcription	HSMMtube	muscle
17	chr11:121007000-121028800	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:121007200-121011400	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr11:121008000-121028600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:121008800-121018600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr11:121008800-121023800	Weak transcription	Fetal Brain Female	brain
22	chr11:121008800-121025600	Weak transcription	Brain Germinal Matrix	brain
23	chr11:121008800-121032800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:121009000-121042800	Weak transcription	Pancreas	Pancrea
25	chr11:121009400-121016400	Weak transcription	Gastric	stomach

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